Evidence map›Paper›PMID 25147916›Full record

ArticleEpigenetics2014

Human factors and pathways essential for mediating epigenetic gene silencing.

Andrey Poleshko, Andrew V Kossenkov, Natalia Shalginskikh, Anna Pecherskaya, Margret B Einarson, Anna Marie Skalka, Richard A Katz

Open access · hybridAbstract read
In one paragraph

Article in Epigenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Professor Emma Whitelaw, a pioneer of epigenetic inheritance.Frontiers in epigenetics and epigenomics · 2025
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. UHRF1 Is a Novel Druggable Epigenetic Target in Malignant Pleural Mesothelioma.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2021
    Article
  8. Article
  9. Roles of the CSE1L-mediated nuclear import pathway in epigenetic silencing.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. SUMO and the robustness of cancer.Nature reviews. Cancer · 2017
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Andrey PoleshkoFox Chase Cancer Center; Philadelphia, PA USA.
Andrew V KossenkovCenter for Systems and Computational Biology; The Wistar Institute; Philadelphia, PA USA.
Natalia ShalginskikhFox Chase Cancer Center; Philadelphia, PA USA.
Anna PecherskayaFox Chase Cancer Center; Philadelphia, PA USA.
Margret B EinarsonFox Chase Cancer Center; Philadelphia, PA USA.
Anna Marie SkalkaFox Chase Cancer Center; Philadelphia, PA USA.
Richard A KatzFox Chase Cancer Center; Philadelphia, PA USA.
Fox Chase Cancer Center · USThe Wistar Institute · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
INTEGRATION OF RETROVIRAL DNA--ACCESSING HOST TARGET DNAR01CA071515 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI KATZ, RICHARD ALAN · 1996 to 2016
$7.6M
Discovery of Epigenetic Marks in Human Cells by High Throughput siRNA ScreeningR01DK082498 · NIDDK · RESEARCH INST OF FOX CHASE CAN CTR · PI KATZ, RICHARD ALAN · 2008 to 2010
$1.2M
NCI NIH HHS CA006927NCI NIH HHS CA071515NCI NIH HHS P30 CA006927NCI NIH HHS P30 CA010815NCI NIH HHS R01 CA071515NIDDK NIH HHS DK082498NIDDK NIH HHS R01 DK082498
6 · The paper itself

Abstract

Cellular identity in both normal and disease processes is determined by programmed epigenetic activation or silencing of specific gene subsets. Here, we have used human cells harboring epigenetically silent GFP-reporter genes to perform a genome-wide siRNA knockdown screen for the identification of cellular factors that are required to maintain epigenetic gene silencing. This unbiased screen interrogated 21,121 genes, and we identified and validated a set of 128 protein factors. This set showed enrichment for functional categories, and protein-protein interactions. Among this set were known epigenetic silencing factors, factors with no previously identified role in epigenetic gene silencing, as well as unstudied factors. The set included non-nuclear factors, for example, components of the integrin-adhesome. A key finding was that the E1 and E2 enzymes of the small ubiquitin-like modifier (SUMO) pathway (SAE1, SAE2/UBA2, UBC9/UBE2I) are essential for maintenance of epigenetic silencing. This work provides the first genome-wide functional view of human factors that mediate epigenetic gene silencing. The screen output identifies novel epigenetic factors, networks, and mechanisms, and provides a set of candidate targets for epigenetic therapy and cellular reprogramming.

Indexed as

Epigenesis, GeneticGene SilencingSignal TransductionGenes, ReporterGreen Fluorescent ProteinsHeLa CellsHumansProteinsRNA, Small InterferingSUMO-1 ProteinGreen Fluorescent ProteinsProteinsRNA, Small InterferingSUMO-1 Proteinepigeneticsepigenetic therapygene silencingintegrinssiRNA screenSUMO pathway

Identifiers

PMID25147916
PMCPMC4169020
OpenAlexW1996431377

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.