Evidence map›Paper›PMID 25147480›Full record

ArticleArchaea (Vancouver, B.C.)2014

Seasonal effects in a lake sediment archaeal community of the Brazilian Savanna.

Thiago Rodrigues, Elisa Catão, Mercedes M C Bustamante, Betania F Quirino, Ricardo H Kruger, Cynthia M Kyaw

Abstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Thiago RodriguesDepartment of Cell Biology, Biological Sciences Institute, University of Brasília, 70910-900 Brasília, DF, Brazil.
Elisa CatãoDepartment of Cell Biology, Biological Sciences Institute, University of Brasília, 70910-900 Brasília, DF, Brazil.
Mercedes M C BustamanteDepartment of Ecology, Biological Sciences Institute, University of Brasília, 70910-900 Brasília, DF, Brazil.
Betania F QuirinoDepartment of Genomics Science and Biotechnology, Catholic University of Brasília, 70790-160 Brasília, DF, Brazil ; Embrapa-Agroenergy, 70770-901 Brasília, DF, Brazil.
Ricardo H KrugerDepartment of Cell Biology, Biological Sciences Institute, University of Brasília, 70910-900 Brasília, DF, Brazil.
Cynthia M KyawDepartment of Cell Biology, Biological Sciences Institute, University of Brasília, 70910-900 Brasília, DF, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Cerrado is a biome that corresponds to 24% of Brazil's territory. Only recently microbial communities of this biome have been investigated. Here we describe for the first time the diversity of archaeal communities from freshwater lake sediments of the Cerrado in the dry season and in the transition period between the dry and rainy seasons, when the first rains occur. Gene libraries were constructed, using Archaea-specific primers for the 16S rRNA and amoA genes. Analysis revealed marked differences between the archaeal communities found in the two seasons. I.1a and I.1c Thaumarchaeota were found in greater numbers in the transition period, while MCG Archaea was dominant on the dry season. Methanogens were only found in the dry season. Analysis of 16S rRNA sequences revealed lower diversity on the transition period. We detected archaeal amoA sequences in both seasons, but there were more OTUs during the dry season. These sequences were within the same cluster as Nitrosotalea devanaterra's amoA gene. The principal coordinate analysis (PCoA) test revealed significant differences between samples from different seasons. These results provide information on archaeal diversity in freshwater lake sediments of the Cerrado and indicates that rain is likely a factor that impacts these communities.

Indexed as

BiodiversityArchaeaBrazilCluster AnalysisDNA, ArchaealDNA, RibosomalGeologic SedimentsLakesMolecular Sequence DataOxidoreductasesPhylogenyRNA, Ribosomal, 16SSeasonsSequence Analysis, DNAammonia monooxygenaseDNA, ArchaealDNA, RibosomalOxidoreductasesRNA, Ribosomal, 16S

Identifiers

PMID25147480
PMCPMC4131120

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.