Evidence map›Paper›PMID 25145833›Full record

ArticleBiophysical chemistry

Calcium-dependent energetics of calmodulin domain interactions with regulatory regions of the Ryanodine Receptor Type 1 (RyR1).

Rhonda A Newman, Brenda R Sorensen, Adina M Kilpatrick, Madeline A Shea

Abstract read
In one paragraph

Article in Biophysical chemistry. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. NaStructure (London, England : 1993) · 2021
    Article
  3. Deletion of Fibroblast growth factor 9 globally and in skeletal muscle results in enlarged tuberosities at sites of deltoid tendon attachments.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Multifaceted Roles of ALG-2 in Ca(2+)-Regulated Membrane Trafficking.International journal of molecular sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rhonda A NewmanDept. of Biochemistry, Univ. of Iowa Roy J. and Lucille A. Carver College of Medicine, Iowa City, IA 52242-1109, United States.
Brenda R SorensenDept. of Biochemistry, Univ. of Iowa Roy J. and Lucille A. Carver College of Medicine, Iowa City, IA 52242-1109, United States.
Adina M KilpatrickDepartment of Physics and Astronomy, Drake University, Des Moines, IA 50311-4516, United States.
Madeline A SheaDept. of Biochemistry, Univ. of Iowa Roy J. and Lucille A. Carver College of Medicine, Iowa City, IA 52242-1109, United States. Electronic address: madeline-shea@uiowa.edu.

Funding

PREDOCTORAL TRAINING PROGRAM IN BIOTECHNOLOGYT32GM008365 · NIGMS · UNIVERSITY OF IOWA · PI KERNS, ROBERT JOHN · 1990 to 2021
$3.8M
MOLECULAR DISSECTION OF CALMODULIN DOMAIN INTERACTIONSR01GM057001 · NIGMS · UNIVERSITY OF IOWA · PI SHEA, MADELINE A · 1998 to 2015
$2.9M
NIGMS NIH HHS NIH T32GM08365NIGMS NIH HHS R01 GM057001NIGMS NIH HHS R01 GM 57001NIGMS NIH HHS T32 GM008365
6 · The paper itself

Abstract

Calmodulin (CaM) allosterically regulates the homo-tetrameric human Ryanodine Receptor Type 1 (hRyR1): apo CaM activates the channel, while (Ca(2+))4-CaM inhibits it. CaM-binding RyR1 residues 1975-1999 and 3614-3643 were proposed to allow CaM to bridge adjacent RyR1 subunits. Fluorescence anisotropy titrations monitored the binding of CaM and its domains to peptides encompassing hRyR(11975-1999) or hRyR1(3614-3643). Both CaM and its C-domain associated in a calcium-independent manner with hRyR1(3614-3643) while N-domain required calcium and bound ~250-fold more weakly. Association with hRyR1(11975-1999) was weak. Both hRyR1 peptides increased the calcium-binding affinity of both CaM domains, while maintaining differences between them. These energetics support the CaM C-domain association with hRyR1(3614-3643) at low calcium, positioning CaM to respond to calcium efflux. However, the CaM N-domain affinity for hRyR(11975-1999) alone was insufficient to support CaM bridging adjacent RyR1 subunits. Other proteins or elements of the hRyR1 structure must contribute to the energetics of CaM-mediated regulation.

Indexed as

Amino Acid SequenceApoproteinsCalciumCalmodulinFluoresceinsFluorescent DyesHumansKineticsModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsRyanodine Receptor Calcium Release ChannelStaining and Labeling6-carboxyfluoresceinApoproteinsCalciumCalmodulinFluoresceinsFluorescent DyesRecombinant ProteinsRyanodine Receptor Calcium Release ChannelAnisotropyFluorescenceIntracellular calcium channelThermodynamicsTitration

Identifiers

PMID25145833
PMCPMC4208696

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.