Evidence map›Paper›PMID 25144198›Full record

ArticlePLoS pathogens2014

NLR-associating transcription factor bHLH84 and its paralogs function redundantly in plant immunity.

Fang Xu, Paul Kapos, Yu Ti Cheng, Meng Li, Yuelin Zhang, Xin Li

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 80 citations in OpenAlex.

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  6. Constitutive Overexpression of an NB-ARC Gene from Wild ChineseInternational journal of molecular sciences · 2024
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  13. A fungal effector suppresses the nuclear export of AGO1-miRNA complex to promote infection in plants.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Interactome of Arabidopsis Thaliana.Plants (Basel, Switzerland) · 2022
    Article
  16. Perception of structurally distinct effectors by the integrated WRKY domain of a plant immune receptor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Review
  18. Review
  19. Recent Findings Unravel Genes and Genetic Factors UnderlyingInternational journal of molecular sciences · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Fang XuMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Paul KaposMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada.
Yu Ti ChengMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada.
Meng LiDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Yuelin ZhangDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada; National Institute of Biological Sciences, Beijing, People's Republic of China.
Xin LiMichael Smith Laboratories, University of British Columbia, Vancouver, British Columbia, Canada; Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Canada's Michael Smith Genome Sciences Centre · CAUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants and animals, nucleotide-binding and leucine-rich repeat domain containing (NLR) immune receptors are utilized to detect the presence or activities of pathogen-derived molecules. However, the mechanisms by which NLR proteins induce defense responses remain unclear. Here, we report the characterization of one basic Helix-loop-Helix (bHLH) type transcription factor (TF), bHLH84, identified from a reverse genetic screen. It functions as a transcriptional activator that enhances the autoimmunity of NLR mutant snc1 (suppressor of npr1-1, constitutive 1) and confers enhanced immunity in wild-type backgrounds when overexpressed. Simultaneously knocking out three closely related bHLH paralogs attenuates RPS4-mediated immunity and partially suppresses the autoimmune phenotypes of snc1, while overexpression of the other two close paralogs also renders strong autoimmunity, suggesting functional redundancy in the gene family. Intriguingly, the autoimmunity conferred by bHLH84 overexpression can be largely suppressed by the loss-of-function snc1-r1 mutation, suggesting that SNC1 is required for its proper function. In planta co-immunoprecipitation revealed interactions between not only bHLH84 and SNC1, but also bHLH84 and RPS4, indicating that bHLH84 associates with these NLRs. Together with previous finding that SNC1 associates with repressor TPR1 to repress negative regulators, we hypothesize that nuclear NLR proteins may interact with both transcriptional repressors and activators during immune responses, enabling potentially faster and more robust transcriptional reprogramming upon pathogen recognition.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGene Knockout TechniquesImmunoprecipitationMicroscopy, ConfocalPlant ImmunityPlants, Genetically ModifiedReverse Transcriptase Polymerase Chain ReactionTranscription FactorsArabidopsis ProteinsTranscription Factors

Identifiers

PMID25144198
PMCPMC4140859
OpenAlexW1988730960

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.