Evidence map›Paper›PMID 25143445›Full record

ArticleThe Journal of infectious diseases2015

Tuberculin skin test negativity is under tight genetic control of chromosomal region 11p14-15 in settings with different tuberculosis endemicities.

Aurélie Cobat, Christine Poirier, Eileen Hoal, Anne Boland-Auge, France de La Rocque, François Corrard, Ghislain Grange, Mélanie Migaud, Jacinta Bustamante, Stéphanie Boisson-Dupuis and 5 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Phenotype Definition for "Resisters" toFrontiers in immunology · 2021
    Review
  13. Article
  14. Article
  15. Review
  16. Tuberculosis susceptibility and protection in children.The Lancet. Infectious diseases · 2019
    Review
  17. The Interplay of Human andFrontiers in genetics · 2019
    Review
  18. Article
  19. Human genetics of mycobacterial disease.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Aurélie CobatMcGill International TB Centre Department of Human Genetics Department of Medicine, McGill University, Montreal, Canada.
Christine PoirierCentre de Lutte Anti-Tuberculeuse, Centre Hospitalier Intercommunal de Créteil, Créteil.
Eileen HoalMolecular Biology and Human Genetics, MRC Centre for Molecular and Cellular Biology, DST/NRF Centre of Excellence for Biomedical TB Research, Faculty of Health Sciences, Stellenbosch University, Tygerberg, South Africa.
Anne Boland-AugeNational Center for Genotyping, Genomic Institute, CEA, Evry.
France de La RocqueAssociation Clinique et Thérapeutique Infantile du Val de Marne, Saint Maur des Fossés.
François CorrardAssociation Clinique et Thérapeutique Infantile du Val de Marne, Saint Maur des Fossés.
Ghislain GrangeLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163.
Mélanie MigaudLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163 University Paris Descartes, Sorbonne Paris Cité, Imagine Institute.
Jacinta BustamanteLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163 University Paris Descartes, Sorbonne Paris Cité, Imagine Institute.
Stéphanie Boisson-DupuisLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163 University Paris Descartes, Sorbonne Paris Cité, Imagine Institute St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch.
Jean-Laurent CasanovaLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163 University Paris Descartes, Sorbonne Paris Cité, Imagine Institute St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch Howard Hughes Medical Institute, Rockefeller University, New York, New York.
Erwin SchurrMcGill International TB Centre Department of Human Genetics Department of Medicine, McGill University, Montreal, Canada.
Alexandre AlcaïsLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163 University Paris Descartes, Sorbonne Paris Cité, Imagine Institute URC, CIC, Necker, and Cochin Hospitals, Paris, France St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch.
Christophe DelacourtPediatric Pneumology Unit, Necker-Enfants-Malades Hospital, AP-HP.
Laurent AbelLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163 University Paris Descartes, Sorbonne Paris Cité, Imagine Institute St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch.

Funding

CIHREuropean Research Council 268777
6 · The paper itself

Abstract

A substantial proportion of subjects exposed to a contagious tuberculosis case display lack of tuberculin skin test (TST) reactivity. We previously mapped a major locus (TST1) controlling lack of TST reactivity in families from an area in South Africa where tuberculosis is hyperendemic. Here, we conducted a household tuberculosis contact study in a French area where the endemicity of tuberculosis is low. A genome-wide analysis of TST negativity identified a significant linkage signal (P < 3 × 10(-5)) in close vicinity of TST1. Combined analysis of the 2 samples increased evidence of linkage (P = 2.4 × 10(-6)), further implicating genetic factors located on 11p14-15. This region overlaps the TNF1 locus controlling mycobacteria-driven tumor necrosis factor α production.

Indexed as

Tuberculin TestAdolescentAdultChildChild, PreschoolFemaleGenetic Association StudiesHumansHypersensitivity, DelayedInfantLinkage DisequilibriumMaleMiddle AgedProspective StudiesSouth AfricaTuberculinTuberculingenome-wide linkagehuman geneticstuberculin skin testtuberculosis infection

Identifiers

PMID25143445
PMCPMC4279780

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.