Evidence map›Paper›PMID 25143401›Full record

ArticleMolecular biology of the cell2014

A Vps21 endocytic module regulates autophagy.

Yong Chen, Fan Zhou, Shenshen Zou, Sidney Yu, Shaoshan Li, Dan Li, Jingzhen Song, Hui Li, Zhiyi He, Bing Hu and 5 more

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Vtc4 Promotes the Entry of Phagophores into Vacuoles in theJournal of fungi (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. Effect ofMolecules (Basel, Switzerland) · 2023
    Article
  9. Article
  10. In situ structural analysis reveals membrane shape transitions during autophagosome formation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Small but mighty: Atg8s and Rabs in membrane dynamics during autophagy.Biochimica et biophysica acta. Molecular cell research · 2021
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Rab5-dependent autophagosome closure by ESCRT.The Journal of cell biology · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yong ChenCollege of Life Sciences, Key Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
Fan ZhouCollege of Life Sciences, Key Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, China School of Biomedical Sciences, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China.
Shenshen ZouCollege of Life Sciences, Key Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, China.
Sidney YuSchool of Biomedical Sciences, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China.
Shaoshan LiKey Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Science, South China Normal University, Guangzhou 510631, China.
Dan LiSchool of Life Sciences and Technology, Shanghai Jiao Tong University, Shanghai 200240, China.
Jingzhen SongSchool of Life Sciences and Technology, Shanghai Jiao Tong University, Shanghai 200240, China.
Hui LiSchool of Life Sciences and Technology, Shanghai Jiao Tong University, Shanghai 200240, China.
Zhiyi HeElectron Microscope Demonstrating Co. Lab of Nanjing Agriculture University and Tianmei High-Tech Corporation, Nanjing 210095, China.
Bing HuElectron Microscope Demonstrating Co. Lab of Nanjing Agriculture University and Tianmei High-Tech Corporation, Nanjing 210095, China.
Lars Olof BjörnKey Laboratory of Ecology and Environmental Science in Guangdong Higher Education, School of Life Science, South China Normal University, Guangzhou 510631, China.
Zhanna LipatovaDepartment of Biochemistry and Molecular Genetics, College of Medicine, University of Illinois at Chicago, Chicago, IL 60607.
Yongheng LiangCollege of Life Sciences, Key Laboratory of Agricultural Environmental Microbiology of Ministry of Agriculture, Nanjing Agricultural University, Nanjing 210095, China liangyh@njau.edu.cn zxie@sjtu.edu.cn nava@uic.edu.
Zhiping XieSchool of Life Sciences and Technology, Shanghai Jiao Tong University, Shanghai 200240, China liangyh@njau.edu.cn zxie@sjtu.edu.cn nava@uic.edu.
Nava SegevDepartment of Biochemistry and Molecular Genetics, College of Medicine, University of Illinois at Chicago, Chicago, IL 60607 liangyh@njau.edu.cn zxie@sjtu.edu.cn nava@uic.edu.

Funding

YPTL GTPASE AND VESICULAR TRANSPORTR01GM045444 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SEGEV, NAVA · 1992 to 2020
$6.4M
NIGMS NIH HHS GM-45444NIGMS NIH HHS R01 GM045444
6 · The paper itself

Abstract

In autophagy, the double-membrane autophagosome delivers cellular components for their degradation in the lysosome. The conserved Ypt/Rab GTPases regulate all cellular trafficking pathways, including autophagy. These GTPases function in modules that include guanine-nucleotide exchange factor (GEF) activators and downstream effectors. Rab7 and its yeast homologue, Ypt7, in the context of such a module, regulate the fusion of both late endosomes and autophagosomes with the lysosome. In yeast, the Rab5-related Vps21 is known for its role in early- to late-endosome transport. Here we show an additional role for Vps21 in autophagy. First, vps21∆ mutant cells are defective in selective and nonselective autophagy. Second, fluorescence and electron microscopy analyses show that vps21∆ mutant cells accumulate clusters of autophagosomal structures outside the vacuole. Third, cells with mutations in other members of the endocytic Vps21 module, including the GEF Vps9 and factors that function downstream of Vps21, Vac1, CORVET, Pep12, and Vps45, are also defective in autophagy and accumulate clusters of autophagosomes. Finally, Vps21 localizes to PAS. We propose that the endocytic Vps21 module also regulates autophagy. These findings support the idea that the two pathways leading to the lysosome--endocytosis and autophagy--converge through the Vps21 and Ypt7 GTPase modules.

Indexed as

EndocytosisAutophagyBiological TransportEndosomesGuanine Nucleotide Exchange FactorsLysosomesPhagosomesrab GTP-Binding ProteinsVacuolesYeastsGuanine Nucleotide Exchange Factorsrab GTP-Binding Proteins

Identifiers

PMID25143401
PMCPMC4196867

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.