Evidence map›Paper›PMID 25143397›Full record

ArticleMolecular biology of the cell2014

Quantitative analysis and modeling of katanin function in flagellar length control.

Elisa Kannegaard, E Hesper Rego, Sebastian Schuck, Jessica L Feldman, Wallace F Marshall

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Frontiers in cell and developmental biology · 2024
    Review
  2. Article
  3. Review
  4. Article
  5. The short flagella 1 (SHF1) gene inMolecular biology of the cell · 2022
    Article
  6. PIPCommunications biology · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Intraflagellar Transport and Ciliary Dynamics.Cold Spring Harbor perspectives in biology · 2017
    Review
  12. Article
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Elisa KannegaardDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158.
E Hesper RegoGraduate Group in Biophysics, University of California, San Francisco, San Francisco, CA 94158 Physiology Course, Marine Biological Laboratory, Woods Hole, MA 02543.
Sebastian SchuckDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158.
Jessica L FeldmanDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158.
Wallace F MarshallDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158 Graduate Group in Biophysics, University of California, San Francisco, San Francisco, CA 94158 Physiology Course, Marine Biological Laboratory, Woods Hole, MA 02543 wallace.marshall@ucsf.edu.
University of California, San Francisco · USMarine Biological Laboratory · US

Funding

Modeling and Analysis of the Flagellar Length Control SystemR01GM097017 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARSHALL, WALLACE · 2011 to 2018
$2.1M
Physiology: Modern Cell Biology Using Microscopic, Biochemical and Computational ApproachesR13GM085967 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI FLETCHER, DANIEL A, HYMAN, LINDA E · 2008 to 2019
$1.7M
NIGMS NIH HHS R01 GM097017NIGMS NIH HHS R13 GM085967
6 · The paper itself

Abstract

Flagellar length control in Chlamydomonas reinhardtii provides a simple model system in which to investigate the general question of how cells regulate organelle size. Previous work demonstrated that Chlamydomonas cytoplasm contains a pool of flagellar precursor proteins sufficient to assemble a half-length flagellum and that assembly of full-length flagella requires synthesis of additional precursors to augment the preexisting pool. The regulatory systems that control the synthesis and regeneration of this pool are not known, although transcriptional regulation clearly plays a role. We used quantitative analysis of length distributions to identify candidate genes controlling pool regeneration and found that a mutation in the p80 regulatory subunit of katanin, encoded by the PF15 gene in Chlamydomonas, alters flagellar length by changing the kinetics of precursor pool utilization. This finding suggests a model in which flagella compete with cytoplasmic microtubules for a fixed pool of tubulin, with katanin-mediated severing allowing easier access to this pool during flagellar assembly. We tested this model using a stochastic simulation that confirms that cytoplasmic microtubules can compete with flagella for a limited tubulin pool, showing that alteration of cytoplasmic microtubule severing could be sufficient to explain the effect of the pf15 mutations on flagellar length.

Indexed as

Models, StatisticalAdenosine TriphosphatasesAlgal ProteinsChlamydomonas reinhardtiiComputer SimulationFlagellaGene Expression RegulationKataninMicrotubulesOrganelle SizeProtein PrecursorsProtein SubunitsSignal TransductionStochastic ProcessesTranscription, GeneticTubulinAdenosine TriphosphatasesAlgal ProteinsKataninProtein PrecursorsProtein SubunitsTubulin

Identifiers

PMID25143397
PMCPMC4230626
OpenAlexW2061280456

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.