Evidence map›Paper›PMID 25143035›Full record

ArticleProceedings. Biological sciences2014

Thermal adaptation and clinal mitochondrial DNA variation of European anchovy.

Gonçalo Silva, Fernando P Lima, Paulo Martel, Rita Castilho

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Article
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  10. The First Genome Survey of the SnailAnimals : an open access journal from MDPI · 2023
    Article
  11. Article
  12. Zoological research · 2023
    Article
  13. Review
  14. Article
  15. Review
  16. Article
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  18. Article
  19. The complete mitogenome ofEcology and evolution · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gonçalo SilvaCentro de Ciências do Mar (CCMAR), Universidade do Algarve, Campus de Gambelas, Faro 8005-139, Portugal.
Fernando P LimaCIBIO, Research Center in Biodiversity and Genetic Resources, University of Porto, Campus Agrário de Vairão, Vairão 4485-661, Portugal.
Paulo MartelCentro de Biomedicina Molecular e Estrutural Instituto de Biotecnologia e Bioengenharia (CBME-Associate Laboratory), Universidade do Algarve, Campus de Gambelas, Faro 8005-139, Portugal.
Rita CastilhoCentro de Ciências do Mar (CCMAR), Universidade do Algarve, Campus de Gambelas, Faro 8005-139, Portugal rcastil@ualg.pt.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural populations of widely distributed organisms often exhibit genetic clinal variation over their geographical ranges. The European anchovy, Engraulis encrasicolus, illustrates this by displaying a two-clade mitochondrial structure clinally arranged along the eastern Atlantic. One clade has low frequencies at higher latitudes, whereas the other has an anti-tropical distribution, with frequencies decreasing towards the tropics. The distribution pattern of these clades has been explained as a consequence of secondary contact after an ancient geographical isolation. However, it is not unlikely that selection acts on mitochondria whose genes are involved in relevant oxidative phosphorylation processes. In this study, we performed selection tests on a fragment of 1044 bp of the mitochondrial cytochrome b gene using 455 individuals from 18 locations. We also tested correlations of six environmental features: temperature, salinity, apparent oxygen utilization and nutrient concentrations of phosphate, nitrate and silicate, on a compilation of mitochondrial clade frequencies from 66 sampling sites comprising 2776 specimens from previously published studies. Positive selection in a single codon was detected predominantly (99%) in the anti-tropical clade and temperature was the most relevant environmental predictor, contributing with 59% of the variance in the geographical distribution of clade frequencies. These findings strongly suggest that temperature is shaping the contemporary distribution of mitochondrial DNA clade frequencies in the European anchovy.

Indexed as

Adaptation, BiologicalEnvironmentTemperatureAnimalsAtlantic OceanBase SequenceDNA, MitochondrialFishesGenes, MitochondrialGenetics, PopulationMediterranean SeaMolecular Sequence DataPhylogenyDNA, MitochondrialadaptationEngraulis encrasicolushigh metabolismmitochondrial cytochrome b genepositive selectionsea temperature

Identifiers

PMID25143035
PMCPMC4150322

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.