Evidence map›Paper›PMID 25142578›Full record

ArticleJournal of virology2014

Chlorovirus PBCV-1 encodes an active copper-zinc superoxide dismutase.

Ming Kang, Garry A Duncan, Charles Kuszynski, George Oyler, Jiayin Zheng, Donald F Becker, James L Van Etten

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. UnveilingISME communications · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Chloroviruses.Viruses · 2019
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Ming KangNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA Department of Plant Pathology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Garry A DuncanDepartment of Biology, Nebraska Wesleyan University, Lincoln, Nebraska, USA.
Charles KuszynskiNebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska, USA.
George OylerDepartment of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA Synaptic Research, LLC, Baltimore, Maryland, USA.
Jiayin ZhengDepartment of Pharmacology and Therapeutics, University of Florida, Gainesville, Florida, USA.
Donald F BeckerDepartment of Biochemistry and Redox Biology Center, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
James L Van EttenDepartment of Plant Pathology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, Nebraska, USA jvanetten1@unl.edu.
University of Nebraska–Lincoln · USJohns Hopkins University · USNebraska Wesleyan University · USUniversity of Florida · USUniversity of Nebraska Medical Center · US

Funding

UNMC Structural Biology CoreP20GM103427 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Heather Colleen Jensen-Smith · 2012 to 2026
$59.2M
ZINC FINGER-INSPIRED FLUORESCENT CHEMOSENSORSP20RR016469 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI TURPEN, JAMES B · 2001 to 2011
$36.2M
VIRAL SHUTOFF OF HOST TRANSCRIPTION--PBCV-1 INFECTEDP20RR015635 · NCRR · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2000 to 2009
$22.1M
Redox Biology CenterP30GM103335 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2012 to 2016
$4.3M
Role of Proline in Redox Homeostasis and ApoptosisR01GM079393 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2008 to 2011
$1.1M
NCRR NIH HHS 5P20RR016469NCRR NIH HHS P20 RR015635NCRR NIH HHS P20 RR016469NCRR NIH HHS P20-RR15635NIGMS NIH HHS 8P20GM103427NIGMS NIH HHS GM079393NIGMS NIH HHS GM32241NIGMS NIH HHS P20 GM103427NIGMS NIH HHS P30 GM103335NIGMS NIH HHS P30GM103335NIGMS NIH HHS R01 GM079393
6 · The paper itself

Abstract

unlabelledSuperoxide dismutases (SODs) are metalloproteins that protect organisms from toxic reactive oxygen species by catalyzing the conversion of superoxide anion to hydrogen peroxide and molecular oxygen. Chlorovirus PBCV-1 encodes a 187-amino-acid protein that resembles a Cu-Zn SOD with all of the conserved amino acid residues for binding copper and zinc (named cvSOD). cvSOD has an internal Met that results in a 165-amino-acid protein (named tcvSOD). Both cvSOD and tcvSOD recombinant proteins inhibited nitroblue tetrazolium reduction of superoxide anion generated in a xanthine-xanthine oxidase system in solution. tcvSOD was chosen for further characterization because it was easier to produce. Recombinant tcvSOD also inhibited a riboflavin photochemical reduction system in a polyacrylamide gel assay, which was blocked by the Cu-Zn SOD inhibitor cyanide but not by azide, which inhibits Fe and Mn SODs. A k(cat)/K(m) value for cvSOD was determined by stop-flow spectrophotometry as 1.28 × 10(8) M(-1) s(-1), suggesting that cvSOD-catalyzed O2 (-) dismutation was not a diffusion controlled encounter. The cvsod gene was expressed as a late gene, and cvSOD activity was detected in purified virions. Superoxide accumulated rapidly during virus infection, and circumstantial evidence indicates that cvSOD aids its decomposition to benefit virus replication. Cu-Zn SOD homologs have been described to occur in 3 other families of large DNA viruses, poxviruses, baculoviruses, and mimiviruses, which group as a clade. Interestingly, cvSOD does not group in the same clade as the other virus SODs but instead groups in an expanded clade that includes Cu-Zn SODs from many cellular organisms. IMPORTANCE: Virus infection often leads to an increase in toxic reactive oxygen species in the host, which can be detrimental to virus replication. Viruses have developed various ways to overcome this barrier. As reported in this article, the chloroviruses often encode and package a functional Cu-Zn superoxide dismutase in the virion that presumably lowers the concentration of reactive oxygen induced early during virus infection.

Indexed as

Amino Acid SequenceCluster AnalysisGene Expression ProfilingGene Expression Regulation, ViralKineticsMolecular Sequence DataNitroblue TetrazoliumOxidation-ReductionPhycodnaviridaePhylogenyRiboflavinSequence AlignmentSequence Homology, Amino AcidSuperoxide DismutaseVirionNitroblue TetrazoliumRiboflavinSuperoxide Dismutase

Identifiers

PMID25142578
PMCPMC4248938
OpenAlexW2147306330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.