Evidence map›Paper›PMID 25141862›Full record

ArticleEMBO reports2014

Flexibility in crosstalk between H2B ubiquitination and H3 methylation in vivo.

Hanneke Vlaming, Tibor van Welsem, Erik L de Graaf, David Ontoso, A F Maarten Altelaar, Pedro A San-Segundo, Albert J R Heck, Fred van Leeuwen

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Decoding Ubiquitin Modifications by Mass Spectrometry.Advances in experimental medicine and biology · 2024
    Review
  3. Article
  4. Article
  5. Fast friends - Ubiquitin-like modifiers as engineered fusion partners.Seminars in cell & developmental biology · 2022
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
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  15. Article
  16. Review
  17. Article
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  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Hanneke VlamingDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Tibor van WelsemDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands.
Erik L de GraafBiomolecular Mass Spectrometry and Proteomics Group, The Netherlands Proteomics Centre Utrecht University, Utrecht, the Netherlands.
David OntosoInstituto de Biología Funcional y Genómica CSIC/University of Salamanca, Salamanca, Spain.
A F Maarten AltelaarBiomolecular Mass Spectrometry and Proteomics Group, The Netherlands Proteomics Centre Utrecht University, Utrecht, the Netherlands.
Pedro A San-SegundoInstituto de Biología Funcional y Genómica CSIC/University of Salamanca, Salamanca, Spain.
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics Group, The Netherlands Proteomics Centre Utrecht University, Utrecht, the Netherlands.
Fred van LeeuwenDivision of Gene Regulation, Netherlands Cancer Institute, Amsterdam, the Netherlands fred.v.leeuwen@nki.nl.
Utrecht University · NLOncode Institute · NLInstituto de Biología Funcional y Genómica · ESThe Netherlands Cancer Institute · NLUniversidad de Salamanca · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone H2B ubiquitination is a dynamic modification that promotes methylation of histone H3K79 and H3K4. This crosstalk is important for the DNA damage response and has been implicated in cancer. Here, we show that in engineered yeast strains, ubiquitins tethered to every nucleosome promote H3K79 and H3K4 methylation from a proximal as well as a more distal site, but only if in a correct orientation. This plasticity indicates that the exact location of the attachment site, the native ubiquitin-lysine linkage and ubiquitination cycles are not critical for trans-histone crosstalk in vivo. The flexibility in crosstalk also indicates that other ubiquitination events may promote H3 methylation.

Indexed as

ChromatinDNA DamageHistone-Lysine N-MethyltransferaseHistonesMethylationNucleosomesSaccharomyces cerevisiaeUbiquitinationUbiquitinsChromatinHistone-Lysine N-MethyltransferaseHistonesNucleosomesUbiquitinschromatincrosstalkDot1histone ubiquitinationSet1

Identifiers

PMID25141862
PMCPMC4253848
OpenAlexW2159429558

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.