Evidence map›Paper›PMID 25140821›Full record

ArticlePloS one2014

Function and evolution of two forms of SecDF homologs in Streptomyces coelicolor.

Zhan Zhou, Yudong Li, Ning Sun, Zhihao Sun, Longxian Lv, Yufeng Wang, Libing Shen, Yong-Quan Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. The Dynamic SecYEG Translocon.Frontiers in molecular biosciences · 2021
    Review
  3. A Novel Two-Component System, Encoded by the sFrontiers in microbiology · 2019
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Zhan ZhouProvince Key Laboratory of Microbial Biochemistry and Metabolism Engineering, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China; Department of Biology and South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, Texas, United States of America; State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai, China.
Yudong LiDepartment of Bioengineering, School of Food Sciences and Biotechnology, Zhejiang Gongshang University, Hangzhou, Zhejiang, China.
Ning SunProvince Key Laboratory of Microbial Biochemistry and Metabolism Engineering, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Zhihao SunProvince Key Laboratory of Microbial Biochemistry and Metabolism Engineering, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Longxian LvProvince Key Laboratory of Microbial Biochemistry and Metabolism Engineering, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Yufeng WangDepartment of Biology and South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, Texas, United States of America.
Libing ShenState Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai, China.
Yong-Quan LiProvince Key Laboratory of Microbial Biochemistry and Metabolism Engineering, College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Zhejiang University · CNFudan University · CNState Key Laboratory of Genetic EngineeringTexas Center for Infectious Disease · US

Funding

RCMI Center for Interdiscplinary Health Research CIHRG12MD007591 · NIMHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI PERRY, GEORGE · 2012 to 2016
$10.4M
Systems Biology of Plasmodium falciparum: Building and Exploring Network ModelsSC1GM100806 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI WANG, YUFENG · 2012 to 2015
$1.5M
Systems Biology of Plasmodium falciparum: Building and Exploring Network ModelsSC1AI080579 · NIAID · UNIVERSITY OF TEXAS SAN ANTONIO · PI WANG, YUFENG · 2008 to 2011
$962k
Systems Biology of Plasmodium falciparum: Building and Exploring Network ModelsSC1GM081068 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI WANG, YUFENG · 2007 to 2007
$248k
NIAID NIH HHS AI080579NIAID NIH HHS SC1 AI080579NIGMS NIH HHS GM100806NIGMS NIH HHS SC1 GM081068NIGMS NIH HHS SC1 GM100806NIMHD NIH HHS G12 MD007591NIMHD NIH HHS G12MD007591
6 · The paper itself

Abstract

The general secretion (Sec) pathway plays a prominent role in bacterial protein export, and the accessory component SecDF has been shown to improve transportation efficiency. Inspection of Streptomyces coelicolor genome reveals the unexpected presence of two different forms of secDF homologous genes: one in fused form (secDF) and the other in separated form (secD and secF). However, the functional role of two SecDF homologs in S. coelicolor has not yet been determined. Transcriptional analysis of secDF homologs reveals that these genes are constitutively expressed. However, the transcript levels of secD and secF are much higher than that of secDF in S. coelicolor. Deletion of secDF or/and secD/secF in S. coelicolor did result in reduced secretion efficiency of Xylanase A and Amylase C, suggesting that they may have redundant functions for Sec-dependent translocation pathway. Moreover, our results also indicate that SecD/SecF plays a more prominent role than SecDF in protein translocation. Evolutionary analysis suggests that the fused and separated SecDF homologs in Streptomyces may have disparate evolutionary ancestries. SecD/SecF may be originated from vertical transmission of existing components from ancestor of Streptomyces species. However, SecDF may be derived from bacterial ancestors through horizontal gene transfer. Alternately, it is also plausible that SecDF may have arisen through additional gene duplication and fusion events. The acquisition of a second copy may confer a selective benefit to Streptomyces by enhancing protein transport capacity. Taken together, our results provide new insights into the potential biological function and evolutionary aspects of the prokaryotic SecDF complex.

Indexed as

Bacterial ProteinsBiological EvolutionGenome, BacterialMembrane ProteinsMembrane Transport ProteinsProtein TransportStreptomyces coelicolorTranscription, GeneticBacterial ProteinsMembrane ProteinsMembrane Transport ProteinssecD protein, BacteriasecF protein, Bacteria

Identifiers

PMID25140821
PMCPMC4139356
OpenAlexW2074959362

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.