Evidence map›Paper›PMID 25140418›Full record

ArticleBiophysical journal2014

Single-molecule tracking of inositol trisphosphate receptors reveals different motilities and distributions.

Ian F Smith, Divya Swaminathan, George D Dickinson, Ian Parker

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Pacemaking in the lymphatic system.The Journal of physiology · 2026
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  7. KRAP tethers IPNature communications · 2021
    Article
  8. IPeLife · 2020
    Article
  9. Spatial-temporal patterning of CaSeminars in cell & developmental biology · 2019
    Review
  10. Article
  11. Structure and Function of IPCold Spring Harbor perspectives in biology · 2019
    Review
  12. Article
  13. All three IPScience signaling · 2018
    Article
  14. Dynamic CaCell calcium · 2018
    Article
  15. CaNature communications · 2017
    Article
  16. IPCellular and molecular life sciences : CMLS · 2017
    Review
  17. Article
  18. Article
  19. Review
  20. On the Adjacency Matrix of RyR2 Cluster Structures.PLoS computational biology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ian F SmithDepartment of Neurobiology and Behavior, University of California, Irvine, California. Electronic address: ismith@uci.edu.
Divya SwaminathanDepartment of Neurobiology and Behavior, University of California, Irvine, California.
George D DickinsonDepartment of Neurobiology and Behavior, University of California, Irvine, California.
Ian ParkerDepartment of Neurobiology and Behavior, University of California, Irvine, California; Department of Physiology and Biophysics, University of California, Irvine, California.
University of California, Irvine · US

Funding

Multi-scale observation and modeling of IP3/Ca signalingR01GM065830 · NIGMS · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI MAK, DON-ON DANIEL, PARKER, IAN · 2002 to 2017
$10.7M
Elementary Events of Intracellular Calcium SignalingR37GM048071 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI PARKER, IAN · 2011 to 2020
$5.3M
SPATIAL AND TEMPORAL ASPECTS OF INSP3 SIGNALLINGR01GM048071 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI PARKER, IAN · 1992 to 2010
$3.9M
Calcium Signals Within Membrane NanotubesR01GM100201 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SMITH, IAN F · 2012 to 2016
$1.5M
NIGMS NIH HHS GM 048071NIGMS NIH HHS GM 065830NIGMS NIH HHS GM 100201NIGMS NIH HHS R01 GM048071NIGMS NIH HHS R01 GM065830NIGMS NIH HHS R01 GM100201NIGMS NIH HHS R37 GM048071
6 · The paper itself

Abstract

Puffs are local Ca(2+) signals that arise by Ca(2+) liberation from the endoplasmic reticulum through the concerted opening of tightly clustered inositol trisphosphate receptors/channels (IP3Rs). The locations of puff sites observed by Ca(2+) imaging remain static over several minutes, whereas fluorescence recovery after photobleaching (FRAP) experiments employing overexpression of fluorescently tagged IP3Rs have shown that the majority of IP3Rs are freely motile. To address this discrepancy, we applied single-molecule imaging to locate and track type 1 IP3Rs tagged with a photoswitchable fluorescent protein and expressed in COS-7 cells. We found that ∼ 70% of the IP3R1 molecules were freely motile, undergoing random walk motility with an apparent diffusion coefficient of ∼ 0.095 μm s(-1), whereas the remaining molecules were essentially immotile. A fraction of the immotile IP3Rs were organized in clusters, with dimensions (a few hundred nanometers across) comparable to those previously estimated for the IP3R clusters underlying functional puff sites. No short-term (seconds) changes in overall motility or in clustering of immotile IP3Rs were apparent following activation of IP3/Ca(2+) signaling. We conclude that stable clusters of small numbers of immotile IP3Rs may underlie local Ca(2+) release sites, whereas the more numerous motile IP3Rs appear to be functionally silent.

Indexed as

AnimalsCalciumChlorocebus aethiopsCOS CellsDiffusionEndoplasmic ReticulumInositol 1,4,5-Trisphosphate ReceptorsInositol PhosphatesLuminescent ProteinsMicroscopy, FluorescenceCalciumInositol 1,4,5-Trisphosphate ReceptorsInositol Phosphatesinositol trispyrophosphateLuminescent Proteins

Identifiers

PMID25140418
PMCPMC4142249
OpenAlexW2160101495

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.