Evidence map›Paper›PMID 25140192›Full record

ArticleImmunome research2013

Navigating diabetes-related immune epitope data: resources and tools provided by the Immune Epitope Database (IEDB).

Kerrie Vaughan, Bjoern Peters, Roberto Mallone, Matthias von Herrath, Bart O Roep, Alessandro Sette

Open access · greenAbstract read
In one paragraph

Article in Immunome research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kerrie VaughanVaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA.
Bjoern PetersVaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA.
Roberto MalloneINSERM, U1016, Cochin Institute, DeAR Lab Avenir, Saint Vincent de Paul Hospital, 82 Avenue Denfert Rochereau, 75674 Paris Cedex 14, France.
Matthias von HerrathDevelopmental Immunology, La Jolla Institute for Allergy and Immunology, La Jolla, CA.
Bart O RoepDepartment for Immunohematology and Blood Transfusion, Leiden University Medical Center, Leiden, Netherlands.
Alessandro SetteVaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA.
La Jolla Institute for Immunology · US

Funding

NIAID NIH HHS HHSN272201200010C
6 · The paper itself

Abstract

backgroundThe Immune Epitope Database (IEDB), originally focused on infectious diseases, was recently expanded to allergy, transplantation and autoimmunity diseases. Here we focus on diabetes, chosen as a prototype autoimmune disease. We utilize a combined tutorial and meta-analysis format, which demonstrates how common questions, related to diabetes epitopes can be answered.

resultsA total of 409 references are captured in the IEDB describing >2,500 epitopes from diabetes associated antigens. The vast majority of data were derived from GAD, insulin, IA-2/PTPRN, IGRP, ZnT8, HSP, and ICA-1, and the experiments related to T cell epitopes and MHC binding far outnumbers B cell assays. We illustrate how to search by specific antigens, epitopes or host. Other examples include searching for tetramers or epitopes restricted by specific alleles or assays of interest, or searching based on the clinical status of the host.

conclusionsThe inventory of all published diabetes epitope data facilitates its access for the scientific community. While the global collection of primary data from the literature reflects potential investigational biases present in the literature, the flexible search approach allows users to perform queries tailored to their preferences, including or excluding data as appropriate. Moreover, the analysis highlights knowledge gaps and identifies areas for future investigation.

Identifiers

PMID25140192
PMCPMC4134942
OpenAlexW2265090142

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.