Evidence map›Paper›PMID 25139429›Full record

ReviewAnnals of botany2014

Back to the future with the AGP-Ca2+ flux capacitor.

Derek T A Lamport, Peter Varnai, Charlotte E Seal

Open access · bronzeAbstract readReview
In one paragraph

Review in Annals of botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 100 citations in OpenAlex.

  1. Review
  2. Article
  3. Arabinogalactan-proteins of the eusporangiate fernCell surface (Amsterdam, Netherlands) · 2025
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Hydroxyproline-Frontiers in plant science · 2022
    Article
  11. Arabinogalactan Protein-Like Proteins FromFrontiers in plant science · 2022
    Article
  12. Article
  13. Article
  14. The placenta ofDiversity · 2021
    Article
  15. Cell wall polymers in theBryophyte diversity and evolution · 2021
    Article
  16. Article
  17. Article
  18. Spatial and Temporal Distribution of Arabinogalactan Proteins duringInternational journal of molecular sciences · 2021
    Article
  19. Paving the Way for Fertilization: The Role of the Transmitting Tract.International journal of molecular sciences · 2021
    Review
  20. A Pipeline towards the Biochemical Characterization of theInternational journal of molecular sciences · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Derek T A LamportSchool of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QG, UK Derekt.t.a.lamport@googlemail.com.
Peter VarnaiSchool of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QG, UK.
Charlotte E SealSeed Conservation Department, Royal Botanic Gardens, Kew, Wakehurst Place, Ardingly, West Sussex RH17 6TN, UK.
University of Sussex · GBRoyal Botanic Gardens, Kew · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundArabinogalactan proteins (AGPs) are ubiquitous in green plants. AGPs comprise a widely varied group of hydroxyproline (Hyp)-rich cell surface glycoproteins (HRGPs). However, the more narrowly defined classical AGPs massively predominate and cover the plasma membrane. Extensive glycosylation by pendant polysaccharides O-linked to numerous Hyp residues like beads of a necklace creates a unique ionic compartment essential to a wide range of physiological processes including germination, cell extension and fertilization. The vital clue to a precise molecular function remained elusive until the recent isolation of small Hyp-arabinogalactan polysaccharide subunits; their structural elucidation by nuclear magentic resonance imaging, molecular simulations and direct experiment identified a 15-residue consensus subunit as a β-1,3-linked galactose trisaccharide with two short branched sidechains each with a single glucuronic acid residue that binds Ca(2+) when paired with its adjacent sidechain. SCOPE: AGPs bind Ca(2+) (Kd ∼ 6 μm) at the plasma membrane (PM) at pH ∼5·5 but release it when auxin-dependent PM H(+)-ATPase generates a low periplasmic pH that dissociates AGP-Ca(2+) carboxylates (pka ∼3); the consequential large increase in free Ca(2+) drives entry into the cytosol via Ca(2+) channels that may be voltage gated. AGPs are thus arguably the primary source of cytosolic oscillatory Ca(2+) waves. This differs markedly from animals, in which cytosolic Ca(2+) originates mostly from internal stores such as the sarcoplasmic reticulum. In contrast, we propose that external dynamic Ca(2+) storage by a periplasmic AGP capacitor co-ordinates plant growth, typically involving exocytosis of AGPs and recycled Ca(2+), hence an AGP-Ca(2+) oscillator.

conclusionsThe novel concept of dynamic Ca(2+) recycling by an AGP-Ca(2+) oscillator solves the long-standing problem of a molecular-level function for classical AGPs and thus integrates three fields: AGPs, Ca(2+) signalling and auxin. This accounts for the involvement of AGPs in plant morphogenesis, including tropic and nastic movements.

Indexed as

Plant DevelopmentCalciumCell MembraneCell WallGalactansGene Expression Regulation, PlantGlycosylationHydrogen-Ion ConcentrationIndoleacetic AcidsModels, BiologicalMucoproteinsPlant Growth RegulatorsPlant ProteinsPlantsSignal Transductionarabinogalactanarabinogalactan proteinsCalciumGalactansIndoleacetic AcidsMucoproteinsPlant Growth RegulatorsPlant ProteinsAGP–Ca2+ flux capacitorArabinogalactan proteinscalcium signallinghydroxyproline-rich glycoproteinsion currentsplant cell wall protein

Identifiers

PMID25139429
PMCPMC4195563
OpenAlexW2321920988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.