Evidence map›Paper›PMID 25139005›Full record

ArticleThe Plant cell2014

Model-assisted analysis of sugar metabolism throughout tomato fruit development reveals enzyme and carrier properties in relation to vacuole expansion.

Bertrand P Beauvoit, Sophie Colombié, Antoine Monier, Marie-Hélène Andrieu, Benoit Biais, Camille Bénard, Catherine Chéniclet, Martine Dieuaide-Noubhani, Christine Nazaret, Jean-Pierre Mazat and 1 more

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
12.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 122 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
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    Review
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  15. Review
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  18. Multi-omics analysis of early leaf development inPatterns (New York, N.Y.) · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Bertrand P BeauvoitINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France Université de Bordeaux, 146 rue Léo-Saignat, F-33076 Bordeaux Cedex, France. bbeauvoi@bordeaux.inra.fr.
Sophie ColombiéINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France.
Antoine MonierINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France.
Marie-Hélène AndrieuINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France.
Benoit BiaisINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France.
Camille BénardINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France.
Catherine ChénicletINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France Université de Bordeaux, 146 rue Léo-Saignat, F-33076 Bordeaux Cedex, France. Université de Bordeaux, Bordeaux Imaging Center, UMS 3420, F-33000 Bordeaux, France CNRS, Bordeaux Imaging Center, UMS 3420, F-33000 Bordeaux, France INSERM, Bordeaux Imaging Center, US 004, F-33000 Bordeaux, France.
Martine Dieuaide-NoubhaniINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France Université de Bordeaux, 146 rue Léo-Saignat, F-33076 Bordeaux Cedex, France.
Christine NazaretInstitut de Mathématiques de Bordeaux, ENSTBB-Institut Polytechnique de Bordeaux, F-33600 Pessac, France.
Jean-Pierre MazatUniversité de Bordeaux, 146 rue Léo-Saignat, F-33076 Bordeaux Cedex, France. IBGC-CNRS, UMR 5095, 33077 Bordeaux Cedex, France.
Yves GibonINRA, UMR 1332 Biologie du Fruit et Pathology, F33883 Villenave d'Ornon Cedex, France.
Institut National de la Recherche Agronomique · MACentre National de la Recherche Scientifique · FRInstitut Polytechnique de Bordeaux · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A kinetic model combining enzyme activity measurements and subcellular compartmentation was parameterized to fit the sucrose, hexose, and glucose-6-P contents of pericarp throughout tomato (Solanum lycopersicum) fruit development. The model was further validated using independent data obtained from domesticated and wild tomato species and on transgenic lines. A hierarchical clustering analysis of the calculated fluxes and enzyme capacities together revealed stage-dependent features. Cell division was characterized by a high sucrolytic activity of the vacuole, whereas sucrose cleavage during expansion was sustained by both sucrose synthase and neutral invertase, associated with minimal futile cycling. Most importantly, a tight correlation between flux rate and enzyme capacity was found for fructokinase and PPi-dependent phosphofructokinase during cell division and for sucrose synthase, UDP-glucopyrophosphorylase, and phosphoglucomutase during expansion, thus suggesting an adaptation of enzyme abundance to metabolic needs. In contrast, for most enzymes, flux rates varied irrespectively of enzyme capacities, and most enzymes functioned at <5% of their maximal catalytic capacity. One of the major findings with the model was the high accumulation of soluble sugars within the vacuole together with organic acids, thus enabling the osmotic-driven vacuole expansion that was found during cell division.

Indexed as

Carbohydrate MetabolismModels, Biologicalbeta-FructofuranosidaseBiological TransportCarrier ProteinsCell DivisionFruitGlucokinaseGlucosyltransferasesKineticsOsmotic PressurePlant ProteinsPlants, Genetically ModifiedSolanum lycopersicumSucroseVacuolesbeta-FructofuranosidaseCarrier ProteinsGlucokinaseGlucosyltransferasesPlant ProteinsSucrosesucrose synthase

Identifiers

PMID25139005
PMCPMC4371827
OpenAlexW2139595602

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.