Evidence map›Paper›PMID 25137133›Full record

ArticlePloS one2014

Mitochondriome and cholangiocellular carcinoma.

Wesam Bahitham, Xiaoping Liao, Fred Peng, Fiona Bamforth, Alicia Chan, Andrew Mason, Bradley Stone, Paul Stothard, Consolato Sergi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Wesam BahithamDepartment of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada.
Xiaoping LiaoDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada.
Fred PengDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada.
Fiona BamforthDepartment of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada.
Alicia ChanDepartment of Genetics, University of Alberta, Edmonton, Alberta, Canada.
Andrew MasonDepartment of Medicine, University of Alberta, Edmonton, Alberta, Canada.
Bradley StoneBenaroya Research Institute, Seattle, Washington, United States of America.
Paul StothardDepartment of Agricultural, Food, and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada.
Consolato SergiDepartment of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada; Department of Pediatrics, University of Alberta, Edmonton, Alberta, Canada.
University of Alberta · CABenaroya Research Institute

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholangiocellular carcinoma (CCA) of the liver was the target of more interest, recently, due mainly to its increased incidence and possible association to new environmental factors. Somatic mitochondrial DNA (mtDNA) mutations have been found in several cancers. Some of these malignancies contain changes of mtDNA, which are not or, very rarely, found in the mtDNA databases. In terms of evolutionary genetics and oncology, these data are extremely interesting and may be considered a sign of poor fitness, which may conduct in some way to different cellular processes, including carcinogenesis. MitoChip analysis is a strong tool for investigations in experimental oncology and was carried out on three CCA cell lines (HuCCT1, Huh-28 and OZ) with different outcome in human and a Papova-immortalized normal hepatocyte cell line (THLE-3). Real time quantitative PCR, western blot analysis, transmission electron microscopy, confocal laser microscopy, and metabolic assays including L-Lactate and NAD+/NADH assays were meticulously used to identify mtDNA copy number, oxidative phosphorylation (OXPHOS) content, ultrastructural morphology, mitochondrial membrane potential (ΔΨm), and differential composition of metabolites, respectively. Among 102 mtDNA changes observed in the CCA cell lines, 28 were non-synonymous coding region alterations resulting in an amino acid change. Thirty-eight were synonymous and 30 involved ribosomal RNA (rRNA) and transfer RNA (tRNA) regions. We found three new heteroplasmic mutations in two CCA cell lines (HuCCT1 and Huh-28). Interestingly, mtDNA copy number was decreased in all three CCA cell lines, while complexes I and III were decreased with depolarization of mitochondria. L-Lactate and NAD+/NADH assays were increased in all three CCA cell lines. MtDNA alterations seem to be a common event in CCA. This is the first study using MitoChip analysis with comprehensive metabolic studies in CCA cell lines potentially creating a platform for future studies on the interactions between normal and neoplastic cells.

Indexed as

Gene Expression Regulation, NeoplasticAmino Acid SubstitutionBile Duct NeoplasmsBile Ducts, IntrahepaticCell Line, TumorCholangiocarcinomaDNA Copy Number VariationsGene Expression ProfilingHepatocytesHumansLactic AcidMembrane Potential, MitochondrialMitochondriaMitochondrial ProteinsMolecular Sequence AnnotationMutationLactic AcidMitochondrial ProteinsNADRNA, RibosomalRNA, Transfer

Identifiers

PMID25137133
PMCPMC4138114
OpenAlexW1983705625

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.