Evidence map›Paper›PMID 25136345›Full record

ArticleFrontiers in plant science2014

Divisions of labor in the thiamin biosynthetic pathway among organs of maize.

Jiahn-Chou Guan, Ghulam Hasnain, Timothy J Garrett, Christine D Chase, Jesse Gregory, Andrew D Hanson, Donald R McCarty

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. B vitamin supply in plants and humans: the importance of vitamer homeostasis.The Plant journal : for cell and molecular biology · 2022
    Review
  5. Natural Variation in Vitamin BFrontiers in plant science · 2022
    Article
  6. Article
  7. TheFrontiers in plant science · 2021
    Article
  8. The importance of thiamine (vitamin BThe Journal of biological chemistry · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jiahn-Chou GuanGenetics Institute and Horticultural Sciences Department, Institute of Food and Agricultural Sciences, University of Florida Gainesville, FL, USA.
Ghulam HasnainHorticultural Sciences Department, Institute of Food and Agricultural Sciences, University of Florida Gainesville, FL, USA.
Timothy J GarrettDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida Gainesville, FL, USA.
Christine D ChaseGenetics Institute and Horticultural Sciences Department, Institute of Food and Agricultural Sciences, University of Florida Gainesville, FL, USA.
Jesse GregoryDepartment of Food Science and Human Nutrition, Institute of Food and Agricultural Sciences, University of Florida Gainesville, FL, USA.
Andrew D HansonHorticultural Sciences Department, Institute of Food and Agricultural Sciences, University of Florida Gainesville, FL, USA.
Donald R McCartyGenetics Institute and Horticultural Sciences Department, Institute of Food and Agricultural Sciences, University of Florida Gainesville, FL, USA.
University of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The B vitamin thiamin is essential for central metabolism in all cellular organisms including plants. While plants synthesize thiamin de novo, organs vary widely in their capacities for thiamin synthesis. We use a transcriptomics approach to appraise the distribution of de novo synthesis and thiamin salvage pathways among organs of maize. We identify at least six developmental contexts in which metabolically active, non-photosynthetic organs exhibit low expression of one or both branches of the de novo thiamin biosynthetic pathway indicating a dependence on inter-cellular transport of thiamin and/or thiamin precursors. Neither the thiazole (THI4) nor pyrimidine (THIC) branches of the pathway are expressed in developing pollen implying a dependence on import of thiamin from surrounding floral and inflorescence organs. Consistent with that hypothesis, organs of the male inflorescence and flowers are shown to have high relative expression of the thiamin biosynthetic pathway and comparatively high thiamin contents. By contrast, divergent patterns of THIC and THI4 expression occur in the shoot apical meristem, embyro sac, embryo, endosperm, and root-tips suggesting that these sink organs acquire significant amounts of thiamin via salvage pathways. In the root and shoot meristems, expression of THIC in the absence of THI4 indicates a capacity for thiamin synthesis via salvage of thiazole, whereas the opposite pattern obtains in embryo and endosperm implying that seed storage organs are poised for pyrimidine salvage. Finally, stable isotope labeling experiments set an upper limit on the rate of de novo thiamin biosynthesis in maize leaf explants. Overall, the observed patterns of thiamin biosynthetic gene expression mirror the strategies for thiamin acquisition that have evolved in bacteria.

Indexed as

comparative transcriptomicsmaize developmentmeristem metabolismpollen developmentthiamin biosynthesis

Identifiers

PMID25136345
PMCPMC4120688
OpenAlexW2087072173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.