Evidence map›Paper›PMID 25136136›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Local anesthetic and antiepileptic drug access and binding to a bacterial voltage-gated sodium channel.

Céline Boiteux, Igor Vorobyov, Robert J French, Christopher French, Vladimir Yarov-Yarovoy, Toby W Allen

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 103 citations in OpenAlex.

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  8. Unplugging lateral fenestrations of NALCN reveals a hidden drug binding site within the pore region.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Cannabidiol inhibits NaNature communications · 2023
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  15. Frontiers in pharmacology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Céline BoiteuxSchool of Applied Sciences and Health Innovations Research Institute, RMIT University, Melbourne, VIC 3001, Australia;
Igor VorobyovDepartment of Chemistry, University of California, Davis, CA 95616;
Robert J FrenchHotchkiss Brain Institute, University of Calgary, Calgary, AB Canada T2N 4N1;
Christopher FrenchDeparmtent of Medicine, University of Melbourne, Melbourne, VIC 3010 Australia; and.
Vladimir Yarov-YarovoyDepartment of Physiology and Membrane Biology, University of California, Davis, CA 95616.
Toby W AllenSchool of Applied Sciences and Health Innovations Research Institute, RMIT University, Melbourne, VIC 3001, Australia; Department of Chemistry, University of California, Davis, CA 95616; toby.allen@rmit.edu.au.
University of California, Davis · USRMIT University · AUUniversity of Calgary · CAUniversity of Melbourne · AU

Funding

Innovative Supercomputing for Breakthrough Molecular DynamicsRC2GM093307 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI DITTRICH, MARKUS · 2009 to 2010
$2.7M
NCCDPHP CDC HHS DP120103548NIGMS NIH HHS RC2 GM093307NIGMS NIH HHS RC2GM093307PHS HHS PSCA00061P
6 · The paper itself

Abstract

Voltage-gated sodium (Nav) channels are important targets in the treatment of a range of pathologies. Bacterial channels, for which crystal structures have been solved, exhibit modulation by local anesthetic and anti-epileptic agents, allowing molecular-level investigations into sodium channel-drug interactions. These structures reveal no basis for the "hinged lid"-based fast inactivation, seen in eukaryotic Nav channels. Thus, they enable examination of potential mechanisms of use- or state-dependent drug action based on activation gating, or slower pore-based inactivation processes. Multimicrosecond simulations of NavAb reveal high-affinity binding of benzocaine to F203 that is a surrogate for FS6, conserved in helix S6 of Domain IV of mammalian sodium channels, as well as low-affinity sites suggested to stabilize different states of the channel. Phenytoin exhibits a different binding distribution owing to preferential interactions at the membrane and water-protein interfaces. Two drug-access pathways into the pore are observed: via lateral fenestrations connecting to the membrane lipid phase, as well as via an aqueous pathway through the intracellular activation gate, despite being closed. These observations provide insight into drug modulation that will guide further developments of Nav inhibitors.

Indexed as

Amino Acid SequenceAnesthetics, LocalAnticonvulsantsArcobacterBenzocaineBinding SitesComputer SimulationMembranes, ArtificialModels, MolecularMolecular Sequence DataPhenytoinProtein Structure, SecondaryProtein SubunitsSequence AlignmentThermodynamicsVoltage-Gated Sodium ChannelsAnesthetics, LocalAnticonvulsantsBenzocaineMembranes, ArtificialPhenytoinProtein SubunitsVoltage-Gated Sodium Channelsbacterial sodium channeldrug binding

Identifiers

PMID25136136
PMCPMC4246943
OpenAlexW2048917081

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.