Evidence map›Paper›PMID 25136118›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Tomato yellow leaf curl virus resistance by Ty-1 involves increased cytosine methylation of viral genomes and is compromised by cucumber mosaic virus infection.

Patrick Butterbach, Maarten G Verlaan, Annette Dullemans, Dick Lohuis, Richard G F Visser, Yuling Bai, Richard Kormelink

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. A dominant mutation in tomato DNA POLYMERASE DELTA 1 causes geminivirus DNA replication catastrophe.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Elucidation of theFrontiers in plant science · 2026
    Article
  6. Review
  7. A TIR-NLR gene from Arabidopsis Pla-1 confers resistance to geminivirus infection.The Plant journal : for cell and molecular biology · 2025
    Article
  8. Article
  9. The tomato gene Ty-6, encoding DNA polymerase delta subunit 1, confers broad resistance to Geminiviruses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  10. Article
  11. Marker assisted pyramiding of major resistance genes of tomato leaf curl and late blight diseases for stabilising tomato production.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Viruses · 2024
    Article
  16. Exploring the source of TYLCV resistance inFrontiers in plant science · 2024
    Article
  17. Article
  18. Advances and Prospects of Virus-Resistant Breeding in Tomatoes.International journal of molecular sciences · 2023
    Review
  19. Article
  20. Infection Defects of RNA and DNA Viruses Induced by Antiviral RNA Interference.Microbiology and molecular biology reviews : MMBR · 2023
    Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Patrick ButterbachLaboratory of Virology, Wageningen University, 6708 PB, Wageningen, The Netherlands;
Maarten G VerlaanPlant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands; and.
Annette DullemansBusiness Unit Biointeractions and Plant Health, Plant Research International, 6708 PB, Wageningen, The Netherlands.
Dick LohuisLaboratory of Virology, Wageningen University, 6708 PB, Wageningen, The Netherlands;
Richard G F VisserPlant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands; and.
Yuling BaiPlant Breeding, Wageningen University and Research Centre, 6708 PB, Wageningen, The Netherlands; and.
Richard KormelinkLaboratory of Virology, Wageningen University, 6708 PB, Wageningen, The Netherlands; richard.kormelink@wur.nl.ORCID http://orcid.org/0000-0001-7360-1884
Wageningen University & Research · NLCentre for BioSystems Genomics · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tomato yellow leaf curl virus (TYLCV) and related begomoviruses are a major threat to tomato production worldwide and, to protect against these viruses, resistance genes from different wild tomato species are introgressed. Recently, the Ty-1 resistance gene was identified, shown to code for an RNA-dependent RNA polymerase and to be allelic with Ty-3. Here we show that upon TYLCV challenging of resistant lines carrying Ty-1 or Ty-3, low virus titers were detected concomitant with the production of relatively high levels of siRNAs whereas, in contrast, susceptible tomato Moneymaker (MM) revealed higher virus titers but lower amounts of siRNAs. Comparative analysis of the spatial genomic siRNA distribution showed a consistent and subtle enrichment for siRNAs derived from the V1 and C3 genes in Ty-1 and Ty-3. In plants containing Ty-2 resistance the virus was hardly detectable, but the siRNA profile resembled the one observed in TYLCV-challenged susceptible tomato (MM). Furthermore, a relative hypermethylation of the TYLCV V1 promoter region was observed in genomic DNA collected from Ty-1 compared with that from (MM). The resistance conferred by Ty-1 was also effective against the bipartite tomato severe rugose begomovirus, where a similar genome hypermethylation of the V1 promoter region was discerned. However, a mixed infection of TYLCV with cucumber mosaic virus compromised the resistance. The results indicate that Ty-1 confers resistance to geminiviruses by increasing cytosine methylation of viral genomes, suggestive of enhanced transcriptional gene silencing. The mechanism of resistance and its durability toward geminiviruses under natural field conditions is discussed.

Indexed as

BegomovirusCucumovirusDisease ResistanceDNA MethylationGenes, PlantGenome, ViralPlant DiseasesRNA-Dependent RNA PolymeraseRNA InterferenceSolanaceaeSolanum lycopersicumRNA-Dependent RNA PolymeraseRNAiSolanaceae

Identifiers

PMID25136118
PMCPMC4156758
OpenAlexW2009477423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.