Evidence map›Paper›PMID 25136104›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Direct measurement of the dielectric polarization properties of DNA.

Ana Cuervo, Pablo D Dans, José L Carrascosa, Modesto Orozco, Gabriel Gomila, Laura Fumagalli

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Rationalizing the environment-dependent photophysical behavior of a DNA luminescent probe by classical and non-adiabatic molecular dynamics simulations.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Combating Coronavirus Using Resonant Electromagnetic Irradiation.IEEE journal of electromagnetics, RF and microwaves in medicine and biology · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ana CuervoDepartment of Structure of Macromolecules, Centro Nacional de Biotecnologia-Consejo Superior de Investigaciones Cientificas, Campus Cantoblanco, 28049 Madrid, Spain;
Pablo D DansInstitute for Research in Biomedicine-Barcelona Supercomputing Center Joint Research Program in Computational Biology, Institute for Research in Biomedicine-Barcelona, 08028 Barcelona, Spain;
José L CarrascosaDepartment of Structure of Macromolecules, Centro Nacional de Biotecnologia-Consejo Superior de Investigaciones Cientificas, Campus Cantoblanco, 28049 Madrid, Spain; Instituto Madrileño de Estudios Avanzados en Nanociencia, Cantoblanco, 28049 Madrid, Spain;
Modesto OrozcoInstitute for Research in Biomedicine-Barcelona Supercomputing Center Joint Research Program in Computational Biology, Institute for Research in Biomedicine-Barcelona, 08028 Barcelona, Spain; Facultat de Biologia, Departament de Bioquímica i Biologia Molecular, Universitat de Barcelona, 08028 Barcelona, Spain;
Gabriel GomilaInstitut de Bioenginyeria de Catalunya, 08028 Barcelona, Spain; and Departament d'Electrònica, Universitat de Barcelona, 08028 Barcelona, Spain.
Laura FumagalliInstitut de Bioenginyeria de Catalunya, 08028 Barcelona, Spain; and Departament d'Electrònica, Universitat de Barcelona, 08028 Barcelona, Spain laura.fumagalli28@gmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The electric polarizability of DNA, represented by the dielectric constant, is a key intrinsic property that modulates DNA interaction with effector proteins. Surprisingly, it has so far remained unknown owing to the lack of experimental tools able to access it. Here, we experimentally resolved it by detecting the ultraweak polarization forces of DNA inside single T7 bacteriophages particles using electrostatic force microscopy. In contrast to the common assumption of low-polarizable behavior like proteins (εr ∼ 2-4), we found that the DNA dielectric constant is ∼ 8, considerably higher than the value of ∼ 3 found for capsid proteins. State-of-the-art molecular dynamic simulations confirm the experimental findings, which result in sensibly decreased DNA interaction free energy than normally predicted by Poisson-Boltzmann methods. Our findings reveal a property at the basis of DNA structure and functions that is needed for realistic theoretical descriptions, and illustrate the synergetic power of scanning probe microscopy and theoretical computation techniques.

Indexed as

Models, ChemicalBacteriophage T7CapsidCationsDielectric SpectroscopyDNADNA-Binding ProteinsDNA, ViralElectrochemical TechniquesLigandsMicroscopy, Atomic ForceNuclear ProteinsCationsDNADNA-Binding ProteinsDNA, ViralLigandsNuclear Proteinsatomic force microscopyatomistic simulationsDNA–ligand bindingDNA packagingPoisson–Boltzmann equation

Identifiers

PMID25136104
PMCPMC4156767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.