Evidence map›Paper›PMID 25136103›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Genetic and pharmacological reactivation of the mammalian inactive X chromosome.

Sanchita Bhatnagar, Xiaochun Zhu, Jianhong Ou, Ling Lin, Lynn Chamberlain, Lihua J Zhu, Narendra Wajapeyee, Michael R Green

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 99 citations in OpenAlex.

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  15. State-of-the-art therapies for Rett syndrome.Developmental medicine and child neurology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Sanchita BhatnagarHoward Hughes Medical Institute and Programs in Gene Function and Expression, Molecular Medicine, and.
Xiaochun ZhuHoward Hughes Medical Institute and Programs in Gene Function and Expression, Molecular Medicine, and.
Jianhong OuGene Function and Expression, Molecular Medicine, and.
Ling LinHoward Hughes Medical Institute and Programs in Gene Function and Expression, Molecular Medicine, and.
Lynn ChamberlainHoward Hughes Medical Institute and Programs in Gene Function and Expression, Molecular Medicine, and.
Lihua J ZhuGene Function and Expression, Molecular Medicine, and Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605; and.
Narendra WajapeyeeDepartment of Pathology, Yale University School of Medicine, New Haven, CT 06520.
Michael R GreenHoward Hughes Medical Institute and Programs in Gene Function and Expression, Molecular Medicine, and Michael.Green@umassmed.edu.
Institute of Molecular Medicine · INHoward Hughes Medical Institute · USYale University · US

Funding

TRANSCRIPTIONAL ACTIVATION BY THE ADENOVIRUS ELA PROTEINR01GM033977 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREEN, MICHAEL R · 1985 to 2013
$3.2M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM033977NIGMS NIH HHS R01GM033977
6 · The paper itself

Abstract

X-chromosome inactivation (XCI), the random transcriptional silencing of one X chromosome in somatic cells of female mammals, is a mechanism that ensures equal expression of X-linked genes in both sexes. XCI is initiated in cis by the noncoding Xist RNA, which coats the inactive X chromosome (Xi) from which it is produced. However, trans-acting factors that mediate XCI remain largely unknown. Here, we perform a large-scale RNA interference screen to identify trans-acting XCI factors (XCIFs) that comprise regulators of cell signaling and transcription, including the DNA methyltransferase, DNMT1. The expression pattern of the XCIFs explains the selective onset of XCI following differentiation. The XCIFs function, at least in part, by promoting expression and/or localization of Xist to the Xi. Surprisingly, we find that DNMT1, which is generally a transcriptional repressor, is an activator of Xist transcription. Small-molecule inhibitors of two of the XCIFs can reversibly reactivate the Xi, which has implications for treatment of Rett syndrome and other dominant X-linked diseases. A homozygous mouse knockout of one of the XCIFs, stanniocalcin 1 (STC1), has an expected XCI defect but surprisingly is phenotypically normal. Remarkably, X-linked genes are not overexpressed in female Stc1(-/-) mice, revealing the existence of a mechanism(s) that can compensate for a persistent XCI deficiency to regulate X-linked gene expression.

Indexed as

AnimalsCerebral CortexChromonesDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesEmbryonic Stem CellsEnzyme InhibitorsEpigenesis, GeneticFemaleFibroblastsGene LibraryGenetic TherapyGlycoproteinsHumansMammalsMethyl-CpG-Binding Protein 22-(4-morpholinyl)-8-phenyl-4H-1-benzopyran-4-oneChromonesDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNMT1 protein, humanDnmt1 protein, mouseEnzyme InhibitorsGlycoproteinsMECP2 protein, humanMethyl-CpG-Binding Protein 2MorpholinesOSU 03012PyrazolesRNA, Long NoncodingRNA, Small InterferingSulfonamidesteleocalcinXIST non-coding RNAMECP2RNA FISHRNA-seq

Identifiers

PMID25136103
PMCPMC4156765
OpenAlexW2113407125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.