Evidence map›Paper›PMID 25136025›Full record

ArticleAntimicrobial agents and chemotherapy2014

Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain.

Typhaine Billard-Pomares, Stéphanie Fouteau, Marie Elise Jacquet, David Roche, Valérie Barbe, Miguel Castellanos, Jean Yves Bouet, Stéphane Cruveiller, Claudine Médigue, Jorge Blanco and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Detection of an ExPEC-likeBiotech (Basel (Switzerland)) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. The extended mobility of plasmids.Nucleic acids research · 2025
    Review
  10. Two novel trimethoprim resistance genes,Antimicrobial agents and chemotherapy · 2025
    Article
  11. Molecular Dialog ofInternational journal of molecular sciences · 2025
    Review
  12. Review
  13. Characterization ofAntibiotics (Basel, Switzerland) · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Comparative genomic analysis of uropathogenicFrontiers in microbiology · 2023
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Typhaine Billard-PomaresINSERM, IAME, UMR 1137, Paris, France Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, France APHP, Hôpital Louis Mourier, Service de Microbiologie, Colombes, France.
Stéphanie FouteauLaboratoire de Finition, Institut de Génomique, Commissariat à l'Energie Atomique, Génoscope, Evry, France.
Marie Elise JacquetLaboratoire de Finition, Institut de Génomique, Commissariat à l'Energie Atomique, Génoscope, Evry, France.
David RocheLaboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Institut de Génomique, Commissariat à l'Energie Atomique, Génoscope, CNRS-UMR 8030, Evry, France.
Valérie BarbeLaboratoire de Finition, Institut de Génomique, Commissariat à l'Energie Atomique, Génoscope, Evry, France.
Miguel CastellanosINSERM, IAME, UMR 1137, Paris, France Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, France.
Jean Yves BouetLaboratoire de Microbiologie et Génétique Moléculaires, CNRS UMR 5100, Toulouse, France Université Toulouse, Université Paul Sabatier, LMGM, Toulouse, France.
Stéphane CruveillerLaboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Institut de Génomique, Commissariat à l'Energie Atomique, Génoscope, CNRS-UMR 8030, Evry, France.
Claudine MédigueLaboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Institut de Génomique, Commissariat à l'Energie Atomique, Génoscope, CNRS-UMR 8030, Evry, France.
Jorge BlancoLaboratorio de Referencia de E. coli (LREC), Departamento de Microbioloxía e Parasitoloxía, Facultade de Veterinaria, Universidade de Santiago de Compostela (USC), Lugo, Spain.
Olivier ClermontINSERM, IAME, UMR 1137, Paris, France Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, France.
Erick DenamurINSERM, IAME, UMR 1137, Paris, France Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, France.
Catherine BrangerINSERM, IAME, UMR 1137, Paris, France Université Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, France APHP, Hôpital Louis Mourier, Service de Microbiologie, Colombes, France catherine.branger@lmr.aphp.fr.
Genoscope · FRCentre National de la Recherche Scientifique · FRInserm · FRUniversité Paris Cité · FRDélégation Paris 7 · FRUniversidade de Santiago de Compostela · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

P1 bacteriophages lysogenize bacteria as independent plasmid-like elements. We describe here a P1-like bacteriophage, RCS47, carrying a blaSHV-2 gene, isolated from a clinical strain of Escherichia coli from phylogroup B1, and we report the prevalence of P1-like prophages in natural E. coli isolates. We found that 70% of the sequence of RCS47, a 115-kb circular molecule, was common to the reference P1 bacteriophage under GenBank accession no. AF234172.1, with the shared sequences being 99% identical. RCS47 had acquired two main foreign DNA fragments: a 9,636-bp fragment mobilized by two IS26 elements containing a blaSHV-2 gene, and an 8,544-bp fragment mobilized by two IS5 elements containing an operon encoding a dimethyl sulfoxide reductase. The reference P1 prophage plasmid replication gene belonged to the IncY incompatibility group, whereas that of RCS47 was from an unknown group. The lytic capacity of RCS47 and blaSHV-2 gene transduction, through the lysogenization of RCS47 in the recipient E. coli strains, were not demonstrated. The prevalence of P1-like prophages in various animal and human E. coli strain collections, as determined by the PCR detection of repL, the lytic replication gene, was 12.6%. No differences in the prevalences of these prophages were found between extended-spectrum β-lactamase (ESBL)-producing and non-ESBL-producing strains (P = 0.69), but this prevalence was lower in phylogroup B2 than in the other phylogroups (P = 0.008), suggesting epistatic interactions between P1 family phages and the genetic background of E. coli strains. P1-like phages are part of the mobile elements that carry antibiotic resistance. The high prevalence of P1-like prophages suggests their role may be underestimated.

Indexed as

Base Sequencebeta-LactamasesChromosomes, Artificial, P1 BacteriophageEscherichia coliEscherichia coli InfectionsHumansMolecular Sequence DataSequence Analysis, DNAbeta-Lactamasesbeta-lactamase SHV-2

Identifiers

PMID25136025
PMCPMC4249366
OpenAlexW2088008448

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.