Evidence map›Paper›PMID 25135942›Full record

ArticleMolecular biology and evolution2014

Integrating evolutionary and functional tests of adaptive hypotheses: a case study of altitudinal differentiation in hemoglobin function in an Andean Sparrow, Zonotrichia capensis.

Zachary A Cheviron, Chandrasekhar Natarajan, Joana Projecto-Garcia, Douglas K Eddy, Jennifer Jones, Matthew D Carling, Christopher C Witt, Hideaki Moriyama, Roy E Weber, Angela Fago and 1 more

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Convergent High OAnimals : an open access journal from MDPI · 2024
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  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. The evolution of ancestral and species-specific adaptations in snowfinches at the Qinghai-Tibet Plateau.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Evolved increases in hemoglobin-oxygen affinity and the Bohr effect coincided with the aquatic specialization of penguins.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Physiological Genomics of Adaptation to High-Altitude Hypoxia.Annual review of animal biosciences · 2021
    Review
  11. Article
  12. Article
  13. Synthesis of Recombinant Human Hemoglobin With NHCurrent protocols in protein science · 2020
    Article
  14. Article
  15. Article
  16. The role of mutation bias in adaptive molecular evolution: insights from convergent changes in protein function.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zachary A ChevironDepartment of Animal Biology, School of Integrative Biology, University of Illinois, Urbana-Champaign School of Biological Sciences, University of Nebraska, Lincoln cheviron@illinois.edu jstorz2@unl.edu.
Chandrasekhar NatarajanSchool of Biological Sciences, University of Nebraska, Lincoln.
Joana Projecto-GarciaSchool of Biological Sciences, University of Nebraska, Lincoln.
Douglas K EddyDepartment of Animal Biology, School of Integrative Biology, University of Illinois, Urbana-Champaign.
Jennifer JonesDepartment of Animal Biology, School of Integrative Biology, University of Illinois, Urbana-Champaign.
Matthew D CarlingDepartment of Zoology and Physiology, University of Wyoming.
Christopher C WittDepartment of Biology, University of New Mexico Museum of Southwestern Biology, University of New Mexico.
Hideaki MoriyamaSchool of Biological Sciences, University of Nebraska, Lincoln.
Roy E WeberZoophysiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.
Angela FagoZoophysiology, Department of Bioscience, Aarhus University, Aarhus, Denmark.
Jay F StorzSchool of Biological Sciences, University of Nebraska, Lincoln cheviron@illinois.edu jstorz2@unl.edu.

Funding

Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
Role of Mitochondrial CYP2E1 in Chemical Exposure-Driven NeurodegenerationF32ES027306 · NIEHS · DUKE UNIVERSITY · PI HARTMAN, JESSICA HELENE · 2016 to 2018
$171k
NHLBI NIH HHS HL087216-S1NHLBI NIH HHS R01 HL087216NIEHS NIH HHS 27306C2005
6 · The paper itself

Abstract

In air-breathing vertebrates, the physiologically optimal blood-O2 affinity is jointly determined by the prevailing partial pressure of atmospheric O2, the efficacy of pulmonary O2 transfer, and internal metabolic demands. Consequently, genetic variation in the oxygenation properties of hemoglobin (Hb) may be subject to spatially varying selection in species with broad elevational distributions. Here we report the results of a combined functional and evolutionary analysis of Hb polymorphism in the rufous-collared sparrow (Zonotrichia capensis), a species that is continuously distributed across a steep elevational gradient on the Pacific slope of the Peruvian Andes. We integrated a population genomic analysis that included all postnatally expressed Hb genes with functional studies of naturally occurring Hb variants, as well as recombinant Hb (rHb) mutants that were engineered through site-directed mutagenesis. We identified three clinally varying amino acid polymorphisms: Two in the α(A)-globin gene, which encodes the α-chain subunits of the major HbA isoform, and one in the α(D)-globin gene, which encodes the α-chain subunits of the minor HbD isoform. We then constructed and experimentally tested single- and double-mutant rHbs representing each of the alternative α(A)-globin genotypes that predominate at different elevations. Although the locus-specific patterns of altitudinal differentiation suggested a history of spatially varying selection acting on Hb polymorphism, the experimental tests demonstrated that the observed amino acid mutations have no discernible effect on respiratory properties of the HbA or HbD isoforms. These results highlight the importance of experimentally validating the hypothesized effects of genetic changes in protein function to avoid the pitfalls of adaptive storytelling.

Indexed as

Adaptation, PhysiologicalAllelesalpha-GlobinsAltitudeAnimalsBiological TransportGene ExpressionGene FrequencyHemoglobinsHypoxiaMutationOxygenProtein EngineeringProtein IsoformsProtein SubunitsRecombinant Proteinsalpha-GlobinsHemoglobinsOxygenProtein IsoformsProtein SubunitsRecombinant Proteinsadaptationfunctional synthesishigh-altitude adaptationhypoxiaprotein evolution

Identifiers

PMID25135942
PMCPMC4209134

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.