Evidence map›Paper›PMID 25135685›Full record

ArticleInfection and immunity2014

Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection.

Melinda M Pettigrew, Laura R Marks, Yong Kong, Janneane F Gent, Hazeline Roche-Hakansson, Anders P Hakansson

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptomic analysis ofMicrobial genomics · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Comparative analysis of theFrontiers in microbiology · 2025
    Article
  12. Review
  13. Biological puzzles solved by usingJournal of bacteriology · 2024
    Review
  14. Review
  15. Article
  16. Biofilm-dispersed pneumococci induce elevated leukocyte and platelet activation.Frontiers in cellular and infection microbiology · 2024
    Article
  17. Article
  18. Article
  19. Isolation ofArchives of Razi Institute · 2023
    Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Melinda M PettigrewDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, USA melinda.pettigrew@yale.edu andersh@buffalo.edu.
Laura R MarksDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York, USA.
Yong KongDepartment of Molecular Biophysics and Biochemistry and W.M. Keck Foundation Biotechnology Resource Laboratory, Yale University, New Haven, Connecticut, USA.
Janneane F GentDepartment of Environmental Health Sciences, Yale School of Public Health, New Haven, Connecticut, USA.
Hazeline Roche-HakanssonDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York, USA.
Anders P HakanssonDepartment of Microbiology and Immunology, University at Buffalo, State University of New York, Buffalo, New York, USA Witebsky Center for Microbial Pathogenesis and Immunology, University at Buffalo, State University of New York, Buffalo, New York, USA New York State Center of Excellence in Bioinformatics and Life Sciences, Buffalo, New York, USA melinda.pettigrew@yale.edu andersh@buffalo.edu.
University at Buffalo, State University of New York · USYale University · US

Funding

Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
Anesthesiology Research Training ProgramT32GM099607 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI KNIGHT III, PAUL R · 2012 to 2021
$1.8M
Pneumococcal transition from nasopharyngeal biofilm carriage to otitis mediaR01DC013554 · NIDCD · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CAMPAGNARI, ANTHONY A · 2014 to 2018
$1.7M
Microbial diversity, otitis media, and the pneumococcal transctiptomeR21DC011667 · NIDCD · YALE UNIVERSITY · PI PETTIGREW, MELINDA MARY · 2011 to 2012
$456k
NCATS NIH HHS UL1 TR000142NIDCD NIH HHS R01 DC013554NIDCD NIH HHS R01DC013554NIDCD NIH HHS R21 DC011667NIDCD NIH HHS R21DC011667NIGMS NIH HHS T32 GM099607NIGMS NIH HHS T32GM099607
6 · The paper itself

Abstract

Streptococcus pneumoniae is a leading cause of infectious disease globally. Nasopharyngeal colonization occurs in biofilms and precedes infection. Prior studies have indicated that biofilm-derived pneumococci are avirulent. However, influenza A virus (IAV) infection releases virulent pneumococci from biofilms in vitro and in vivo. Triggers of dispersal include IAV-induced changes in the nasopharynx, such as increased temperature (fever) and extracellular ATP (tissue damage). We used whole-transcriptome shotgun sequencing (RNA-seq) to compare the S. pneumoniae transcriptome in biofilms, bacteria dispersed from biofilms after exposure to IAV, febrile-range temperature, or ATP, and planktonic cells grown at 37°C. Compared with biofilm bacteria, actively dispersed S. pneumoniae, which were more virulent in invasive disease, upregulated genes involved in carbohydrate metabolism. Enzymatic assays for ATP and lactate production confirmed that dispersed pneumococci exhibited increased metabolism compared to those in biofilms. Dispersed pneumococci also upregulated genes associated with production of bacteriocins and downregulated colonization-associated genes related to competence, fratricide, and the transparent colony phenotype. IAV had the largest impact on the pneumococcal transcriptome. Similar transcriptional differences were also observed when actively dispersed bacteria were compared with avirulent planktonic bacteria. Our data demonstrate complex changes in the pneumococcal transcriptome in response to IAV-induced changes in the environment. Our data suggest that disease is caused by pneumococci that are primed to move to tissue sites with altered nutrient availability and to protect themselves from the nasopharyngeal microflora and host immune response. These data help explain pneumococcal virulence after IAV infection and have important implications for studies of S. pneumoniae pathogenesis.

Indexed as

Influenza A virusAnimalsBiofilmsCell Line, TumorEpithelial CellsHumansMiceMice, Inbred BALB COrthomyxoviridae InfectionsPneumococcal InfectionsReverse Transcriptase Polymerase Chain ReactionSepsisStreptococcus pneumoniae

Identifiers

PMID25135685
PMCPMC4249342
OpenAlexW2317658790

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.