Evidence map›Paper›PMID 25135681›Full record

ArticleInfection and immunity2014

Characterization of wheat germ agglutinin lectin-reactive glycosylated OmpA-like proteins derived from Porphyromonas gingivalis.

Yukitaka Murakami, Yoshiaki Hasegawa, Keiji Nagano, Fuminobu Yoshimura

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. mBio · 2025
    Article
  2. Review
  3. Review
  4. Mechanisms ofJournal of oral microbiology · 2023
    Review
  5. Article
  6. The dental plaque biofilm matrix.Periodontology 2000 · 2021
    Review
  7. Article
  8. Review
  9. Article
  10. OmpA-Like Proteins ofJournal of pathogens · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Yukitaka MurakamiDepartment of Oral Microbiology, Asahi University School of Dentistry, Mizuho, Gifu, Japan murakami@dent.asahi-u.ac.jp.
Yoshiaki HasegawaDepartment of Oral Microbiology, Asahi University School of Dentistry, Mizuho, Gifu, Japan Department of Microbiology, School of Dentistry, Aichi Gakuin University, Nagoya, Aichi, Japan.
Keiji NaganoDepartment of Microbiology, School of Dentistry, Aichi Gakuin University, Nagoya, Aichi, Japan.
Fuminobu YoshimuraDepartment of Microbiology, School of Dentistry, Aichi Gakuin University, Nagoya, Aichi, Japan.
Aichi Gakuin University · JPAsahi University · JPMizuho (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycosylation is one of the common posttranslational modifications in eukaryotes. Recently, glycosylated proteins have also been identified in prokaryotes. A few glycosylated proteins, including gingipains, have been identified in Porphyromonas gingivalis, a major pathogen associated with chronic periodontitis. However, no other glycosylated proteins have been found. The present study identified glycoproteins in P. gingivalis cell lysates by lectin blotting. Whole-cell lysates reacted with concanavalin A (ConA), Lens culinaris agglutinin (LCA), Phaseolus vulgaris erythroagglutinin (PHA-E4), and wheat germ agglutinin (WGA), suggesting the presence of mannose-, N-acetylgalactosamine-, or N-acetylglucosamine (GlcNAc)-modified proteins. Next, glycoproteins were isolated by ConA-, LCA-, PHA-E4-, or WGA-conjugated lectin affinity chromatography although specific proteins were enriched only by the WGA column. Mass spectrometry analysis showed that an OmpA-like, heterotrimeric complex formed by Pgm6 and Pgm7 (Pgm6/7) was the major glycoprotein isolated from P. gingivalis. Deglycosylation experiments and Western blotting with a specific antibody indicated that Pgm6/7 was modified with O-GlcNAc. When whole-cell lysates from P. gingivalis mutant strains with deletions of Pgm6 and Pgm7 were applied to a WGA column, homotrimeric Pgm7, but not Pgm6, was isolated. Heterotrimeric Pgm6/7 had the strongest affinity for fibronectin of all the extracellular proteins tested, whereas homotrimeric Pgm7 showed reduced binding activity. These findings suggest that the heterotrimeric structure is important for the biological activity of glycosylated WGA-binding OmpA-like proteins in P. gingivalis.

Indexed as

Amino Acid SequenceBacterial ProteinsGene Expression Regulation, BacterialGlycosylationMolecular Sequence DataPorphyromonas gingivalisProtein BindingWheat Germ AgglutininsBacterial ProteinsWheat Germ Agglutinins

Identifiers

PMID25135681
PMCPMC4249326
OpenAlexW2155250095

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.