Evidence map›Paper›PMID 25135225›Full record

ArticleBMC medical genetics2014

Recurrent 8q13.2-13.3 microdeletions associated with branchio-oto-renal syndrome are mediated by human endogenous retroviral (HERV) sequence blocks.

Xiaoli Chen, Jun Wang, Elyse Mitchell, Jin Guo, Liwen Wang, Yu Zhang, Jennelle C Hodge, Yiping Shen

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  3. CRISPR-based editing strategies to rectifyMolecular therapy. Nucleic acids · 2024
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  7. Genetic research progress in branchioZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2022
    Article
  8. Article
  9. Genetic Basis of Ureterocele.Current genomics · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Xiaoli Chen
Jun Wang
Elyse Mitchell
Jin Guo
Liwen Wang
Yu Zhang
Jennelle C Hodge
Yiping Shen
Capital Institute of Pediatrics · CNChildren's Hospital of Capital Institute of Pediatrics · CNMayo Clinic · USMayo Clinic in Arizona · USShanghai Children's Medical Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHuman endogenous retroviral (HERV) sequences are the remnants of ancient retroviral infection and comprise approximately 8% of the human genome. The high abundance and interspersed nature of homologous HERV sequences make them ideal substrates for genomic rearrangements. A role for HERV sequences in mediating human disease-associated rearrangement has been reported but is likely currently underappreciated. METHODS AND

resultsIn the present study, two independent de novo 8q13.2-13.3 microdeletion events were identified in patients with clinical features of Branchio-Oto-Renal (BOR) syndrome. Nucleotide-level mapping demonstrated the identical breakpoints, suggesting a recurrent microdeletion including multiple genes such as EYA1, SULF1, and SLCO5A1, which is mediated by HERV1 homologous sequences.

conclusionsThese findings raise the potential that HERV sequences may more commonly underlie recombination of dosage sensitive regions associated with recurrent syndromes.

Indexed as

Chromosomes, Human, Pair 8Base SequenceBranchio-Oto-Renal SyndromeChromosome MappingComparative Genomic HybridizationEndogenous RetrovirusesFemaleGene DeletionHearing LossHumansInfantInfant, NewbornIntracellular Signaling Peptides and ProteinsMaleNuclear ProteinsOrganic Anion TransportersEYA1 protein, humanIntracellular Signaling Peptides and ProteinsNuclear ProteinsOrganic Anion TransportersProtein Tyrosine PhosphatasesSLCO5A1 protein, humanSULF1 protein, humanSulfotransferases

Identifiers

PMID25135225
PMCPMC4152767
OpenAlexW2118831070

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.