Evidence map›Paper›PMID 25133777›Full record

ArticlePloS one2014

HPLC-MS/MS analyses show that the near-Starchless aps1 and pgm leaves accumulate wild type levels of ADPglucose: further evidence for the occurrence of important ADPglucose biosynthetic pathway(s) alternative to the pPGI-pPGM-AGP pathway.

Abdellatif Bahaji, Edurne Baroja-Fernández, Angela María Sánchez-López, Francisco José Muñoz, Jun Li, Goizeder Almagro, Manuel Montero, Pablo Pujol, Regina Galarza, Kentaro Kaneko and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Knockout ofInternational journal of molecular sciences · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Recent Advances in Carbon and Nitrogen Metabolism in C3 Plants.International journal of molecular sciences · 2020
    Review
  8. Article
  9. An Overview of Sucrose Synthases in Plants.Frontiers in plant science · 2019
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Abdellatif BahajiInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Edurne Baroja-FernándezInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Angela María Sánchez-LópezInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Francisco José MuñozInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Jun LiInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Goizeder AlmagroInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Manuel MonteroInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Pablo PujolServicio de Apoyo a la Investigación, Universidad Pública de Navarra, Campus de Arrosadia, Iruña, Nafarroa, Spain.
Regina GalarzaServicio de Apoyo a la Investigación, Universidad Pública de Navarra, Campus de Arrosadia, Iruña, Nafarroa, Spain.
Kentaro KanekoDepartment of Applied Biological Chemistry, Niigata University, Niigata, Japan.
Kazusato OikawaDepartment of Applied Biological Chemistry, Niigata University, Niigata, Japan.
Kaede WadaDepartment of Applied Biological Chemistry, Niigata University, Niigata, Japan.
Toshiaki MitsuiDepartment of Applied Biological Chemistry, Niigata University, Niigata, Japan.
Javier Pozueta-RomeroInstituto de Agrobiotecnología, Universidad Pública de Navarra/Consejo Superior de Investigaciones Científicas/Gobierno de Navarra, Mutiloabeti, Nafarroa, Spain.
Consejo Superior de Investigaciones Científicas · ESNiigata University · JPUniversidad Publica de Navarra · ESAgrobiotechnology Institute · ESGobierno de Navarra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In leaves, it is widely assumed that starch is the end-product of a metabolic pathway exclusively taking place in the chloroplast that (a) involves plastidic phosphoglucomutase (pPGM), ADPglucose (ADPG) pyrophosphorylase (AGP) and starch synthase (SS), and (b) is linked to the Calvin-Benson cycle by means of the plastidic phosphoglucose isomerase (pPGI). This view also implies that AGP is the sole enzyme producing the starch precursor molecule, ADPG. However, mounting evidence has been compiled pointing to the occurrence of important sources, other than the pPGI-pPGM-AGP pathway, of ADPG. To further explore this possibility, in this work two independent laboratories have carried out HPLC-MS/MS analyses of ADPG content in leaves of the near-starchless pgm and aps1 mutants impaired in pPGM and AGP, respectively, and in leaves of double aps1/pgm mutants grown under two different culture conditions. We also measured the ADPG content in wild type (WT) and aps1 leaves expressing in the plastid two different ADPG cleaving enzymes, and in aps1 leaves expressing in the plastid GlgC, a bacterial AGP. Furthermore, we measured the ADPG content in ss3/ss4/aps1 mutants impaired in starch granule initiation and chloroplastic ADPG synthesis. We found that, irrespective of their starch contents, pgm and aps1 leaves, WT and aps1 leaves expressing in the plastid ADPG cleaving enzymes, and aps1 leaves expressing in the plastid GlgC accumulate WT ADPG content. In clear contrast, ss3/ss4/aps1 leaves accumulated ca. 300 fold-more ADPG than WT leaves. The overall data showed that, in Arabidopsis leaves, (a) there are important ADPG biosynthetic pathways, other than the pPGI-pPGM-AGP pathway, (b) pPGM and AGP are not major determinants of intracellular ADPG content, and (c) the contribution of the chloroplastic ADPG pool to the total ADPG pool is low.

Indexed as

Chromatography, High Pressure LiquidTandem Mass SpectrometryAdenosine Diphosphate GlucoseArabidopsisArabidopsis ProteinsGlucose-1-Phosphate AdenylyltransferaseGlucose-6-Phosphate IsomerasePlant LeavesPlastidsStarch SynthaseAdenosine Diphosphate GlucoseArabidopsis ProteinsGlucose-1-Phosphate AdenylyltransferaseGlucose-6-Phosphate IsomeraseStarch Synthase

Identifiers

PMID25133777
PMCPMC4136846
OpenAlexW2008518142

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.