Evidence map›Paper›PMID 25132279›Full record

ArticlePhytochemistry2015

Characterization, mutagenesis and mechanistic analysis of an ancient algal sterol C24-methyltransferase: Implications for understanding sterol evolution in the green lineage.

Brad A Haubrich, Emily K Collins, Alicia L Howard, Qian Wang, William J Snell, Matthew B Miller, Crista D Thomas, Stephanie K Pleasant, W David Nes

Open access · greenAbstract read
In one paragraph

Article in Phytochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. De novo phytosterol synthesis in animals.Science (New York, N.Y.) · 2023
    Article
  5. Review
  6. Article
  7. Inhibition of Phytosterol Biosynthesis by Azasterols.Molecules (Basel, Switzerland) · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Microbial Sterolomics as a Chemical Biology Tool.Molecules (Basel, Switzerland) · 2018
    Review
  12. Functional importance for developmental regulation of sterol biosynthesis in Acanthamoeba castellanii.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2018
    Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Brad A HaubrichCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States.
Emily K CollinsCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States.
Alicia L HowardCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States.
Qian WangDepartment of Cell Biology, University of Texas Southwestern Medical School, Dallas, TX 75390, United States.
William J SnellDepartment of Cell Biology, University of Texas Southwestern Medical School, Dallas, TX 75390, United States.
Matthew B MillerCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States.
Crista D ThomasCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States.
Stephanie K PleasantCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States.
W David NesCenter for Chemical Biology and Department of Chemistry & Biochemistry, Texas Tech University, Lubbock, TX 79409, United States. Electronic address: wdavid.nes@ttu.edu.
Texas Tech University · USThe University of Texas Southwestern Medical Center · US

Funding

CELL SURFACE RECOGNITION AND CELL INTERACTIONSR01GM025661 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SNELL, WILLIAM J · 1985 to 2017
$5.9M
NIGMS NIH HHS GM-25661NIGMS NIH HHS R01 GM025661
6 · The paper itself

Abstract

Sterol C24-methyltransferases (SMTs) constitute a group of sequence-related proteins that catalyze the pattern of sterol diversity across eukaryotic kingdoms. The only gene for sterol alkylation in green algae was identified and the corresponding catalyst from Chlamydomonas reinhardtii (Cr) was characterized kinetically and for product distributions. The properties of CrSMT were similar to those predicted for an ancient SMT expected to possess broad C3-anchoring requirements for substrate binding and formation of 24β-methyl/ethyl Δ(25(27))-olefin products typical of primitive organisms. Unnatural Δ(24(25))-sterol substrates, missing a C4β-angular methyl group involved with binding orientation, convert to product ratios in favor of Δ(24(28))-products. Remodeling the active site to alter the electronics of Try110 (to Leu) results in delayed timing of the hydride migration from methyl attack of the Δ(24)-bond, that thereby produces metabolic switching of product ratios in favor of Δ(25(27))-olefins or impairs the second C1-transfer activity. Incubation of [27-(13)C]lanosterol or [methyl-(2)H3]SAM as co-substrates established the CrSMT catalyzes a sterol methylation pathway by the "algal" Δ(25(27))-olefin route, where methylation proceeds by a conserved SN2 reaction and de-protonation proceeds from the pro-Z methyl group on lanosterol corresponding to C27. This previously unrecognized catalytic competence for an enzyme of sterol biosynthesis, together with phylogenomic analyses, suggest that mutational divergence of a promiscuous SMT produced substrate- and phyla-specific SMT1 (catalyzes first biomethylation) and SMT2 (catalyzes second biomethylation) isoforms in red and green algae, respectively, and in the case of SMT2 selection afforded modification in reaction channeling necessary for the switch in ergosterol (24β-methyl) biosynthesis to stigmasterol (24α-ethyl) biosynthesis during the course of land plant evolution.

Indexed as

MethyltransferasesAmino Acid SequenceChlamydomonasChlorophytaGas Chromatography-Mass SpectrometryIsotope LabelingMagnoliopsidaMolecular StructureMutagenesisNuclear Magnetic Resonance, BiomolecularS-AdenosylmethionineSterolsMethyltransferasesS-AdenosylmethionineSterolsChlamydmonas reinhardtii green algaeCholesterolErgosterolSMT1SMT2Sterol C24-methyltransferaseSterol evolution

Identifiers

PMID25132279
PMCPMC5182512
OpenAlexW2072817896

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.