Evidence map›Paper›PMID 25132180›Full record

ArticleNature structural & molecular biology2014

Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex.

Bruce A Knutson, Jie Luo, Jeffrey Ranish, Steven Hahn

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 48 citations in OpenAlex.

  1. Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  18. RNA polymerase I, bending the rules?The EMBO journal · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Bruce A Knutson1] Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA. [2].
Jie LuoInstitute for Systems Biology, Seattle, Washington, USA.
Jeffrey RanishInstitute for Systems Biology, Seattle, Washington, USA.
Steven HahnDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAInstitute for Systems Biology · USSeattle University · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
MOLECULAR ANALYSIS OF RNAPIII TRANSCRIPTION INITIATIONR01GM053451 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HAHN, STEVEN M · 1995 to 2020
$11.4M
Mapping the Dynamic Architecture of the Human Mediator ComplexR21CA175849 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2013 to 2014
$385k
NCI NIH HHS P30 CA015704NCI NIH HHS R21 CA175849NCI NIH HHS R21CA175849NIGMS NIH HHS 2P50 GM07547NIGMS NIH HHS 2R01GM053451NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM053451
6 · The paper itself

Abstract

Core Factor (CF) is a conserved RNA polymerase (Pol) I general transcription factor comprising Rrn6, Rrn11 and the TFIIB-related subunit Rrn7. CF binds TATA-binding protein (TBP), Pol I and the regulatory factors Rrn3 and upstream activation factor. We used chemical cross-linking-MS to determine the molecular architecture of CF and its interactions with TBP. The CF subunits assemble through an interconnected network of interactions between five structural domains that are conserved in orthologous subunits of the human Pol I factor SL1. We validated the cross-linking-derived model through a series of genetic and biochemical assays. Our combined results show the architecture of CF and the functions of the CF subunits in assembly of the complex. We extend these findings to model how CF assembles into the Pol I preinitiation complex, providing new insight into the roles of CF, TBP and Rrn3.

Indexed as

Models, MolecularPol1 Transcription Initiation Complex ProteinsProtein Structure, TertiaryProtein SubunitsRNA Polymerase ISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsPol1 Transcription Initiation Complex ProteinsProtein SubunitsRNA Polymerase IRRN11 protein, S cerevisiaeRRN6 protein, S cerevisiaeRRN7 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID25132180
PMCPMC4219626
OpenAlexW1978386765

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.