ArticleMicrobes and environments2014
Phylogeny and functions of bacterial communities associated with field-grown rice shoots.
Article in Microbes and environments, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Closing the Loop in the Carbon Cycle: Enzymatic Reactions Housed in Metal-Organic Frameworks for COApplied biochemistry and biotechnology · 2025Review
- Roles of Phyllosphere Microbes in Rice Health and Productivity.Plants (Basel, Switzerland) · 2024Review
- Endosphere mycobiome in mature rice roots originate from both seedlings and soils.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024Article
- Genotype and organ effect on the occupancy of phyllosphere prokaryotes in different rice landraces.Archives of microbiology · 2022Article
- 16S rRNA Gene-Based Metagenomic Analysis of Rhizosphere Soil Bacteria in Arkansas Rice Crop Fields.Agronomy (Basel, Switzerland) · 2022Article
- Massively parallel single-cell genomics of microbiomes in rice paddies.Frontiers in microbiology · 2022Article
- Peculiarities of nitronate monooxygenases and perspectives for in vivo and in vitro applications.Applied microbiology and biotechnology · 2021Review
- Genotypic Variation of Endophytic Nitrogen-Fixing Activity and Bacterial Flora in Rice Stem Based on Sugar Content.Frontiers in plant science · 2021Article
- Community Analysis-based Screening of Plant Growth-promoting Bacteria for Sugar Beet.Microbes and environments · 2021Article
- Characterization of the Leaf Microbiome from Whole-Genome Sequencing Data of the 3000 Rice Genomes Project.Rice (New York, N.Y.) · 2020Article
- Plant-Associated Microbes: From Rhizobia To Plant Microbiomes.Microbes and environments · 2018Article
- Improvement of rice seedling growth and nitrogen use efficiency by seed inoculation with endophytic denitrifiers.Environmental science and pollution research international · 2017Article
- Metagenomic Analysis Revealed Methylamine and Ureide Utilization of Soybean-Associated Methylobacterium.Microbes and environments · 2016Article
- MMinte: an application for predicting metabolic interactions among the microbial species in a community.BMC bioinformatics · 2016Article
- Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria.Frontiers in microbiology · 2015Article
- Endophytic Actinobacteria and the Interaction of Micromonospora and Nitrogen Fixing Plants.Frontiers in microbiology · 2015Review
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Metagenomic analysis was applied to bacterial communities associated with the shoots of two field-grown rice cultivars, Nipponbare and Kasalath. In both cultivars, shoot microbiomes were dominated by Alphaproteobacteria (51-52%), Actinobacteria (11-15%), Gammaproteobacteria (9-10%), and Betaproteobacteria (4-10%). Compared with other rice microbiomes (root, rhizosphere, and phyllosphere) in public databases, the shoot microbiomes harbored abundant genes for C1 compound metabolism and 1-aminocyclopropane-1-carboxylate catabolism, but fewer genes for indole-3-acetic acid production and nitrogen fixation. Salicylate hydroxylase was detected in all microbiomes, except the rhizosphere. These genomic features facilitate understanding of plant-microbe interactions and biogeochemical metabolism in rice shoots.
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