Evidence map›Paper›PMID 25130193›Full record

ArticleHepatology (Baltimore, Md.)2015

Polymorphisms in melanoma differentiation-associated gene 5 link protein function to clearance of hepatitis C virus.

Franziska S Hoffmann, Andreas Schmidt, Meike Dittmann Chevillotte, Christian Wisskirchen, Johannes Hellmuth, Simone Willms, Rachel H Gilmore, Jürgen Glas, Matthias Folwaczny, Tobias Müller and 8 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Hepatology (Baltimore, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

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  13. Severe viral respiratory infections in children withProceedings of the National Academy of Sciences of the United States of America · 2017
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  18. Immunopathogenesis of Hepatitis C Virus Infection.Gastroenterology clinics of North America · 2015
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 3 countries.

Franziska S HoffmannCenter of Integrated Protein Research Munich (CIPS-M) and Division of Clinical Pharmacology, Medizinische Klinik IV, University of Munich, Munich, Germany; Institute of Clinical Neuroimmunology, Klinikum Groβhadern, University of Munich, Munich, Germany.
Andreas Schmidt
Meike Dittmann Chevillotte
Christian Wisskirchen
Johannes Hellmuth
Simone Willms
Rachel H Gilmore
Jürgen Glas
Matthias Folwaczny
Tobias Müller
Thomas Berg
Ulrich Spengler
Karen Fitzmaurice
Dermot Kelleher
Nicole Reisch
Charles M Rice
Stefan Endres
Simon Rothenfusser
Center for Integrated Protein Science Munich · DERockefeller University · USSt. James's Hospital · IECharité - Universitätsmedizin Berlin · DELMU Klinikum · DERWTH Aachen University · DEUniversity Hospital Leipzig · DEUniversity of Bonn · DE

Funding

Type I interferon-stimulated genes and the antiviral immune responseR01AI091707 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2011 to 2020
$5.5M
NIAID NIH HHS AI091707NIAID NIH HHS R01 AI091707
6 · The paper itself

Abstract

unlabelledAmong patients newly infected with hepatitis C virus (HCV), only 20-30% clear the infection spontaneously. In the remaining 70% the infection persists, causing chronic liver inflammation and disease. It is well established that polymorphisms in host genes, especially in components of the innate immune response, contribute to the phenomenon of spontaneous HCV clearance. Retinoic acid inducible gene-I (RIG-I)-like helicases such as melanoma differentiation-associated gene 5 (MDA-5) are cytoplasmic sensors of viral RNA that are critical for triggering innate immune responses after infection with RNA viruses. We analyzed 14 nonsynonymous single-nucleotide polymorphisms in RIG-I-like helicase-pathway-genes comparing European patients who spontaneously cleared HCV (n = 285) or had persistent infection (n = 509). We found that polymorphic haplotypes in the MDA-5 gene IFIH1 encoding histidine at position 843 and threonine at position 946 strongly correlate with the resolution of HCV infection (odds ratio [OR]: 16.23; 95% confidence interval [CI]: 3.67-71.87; P = 1.1 × 10(-6) ). Overexpression of MDA-5 genetic variants in HEK 293 cells and in a tissue culture model of HCV infection revealed that the histidine 843/threonine 946 variant leads to increased baseline and ligand-induced expression of interferon-induced genes and confers an increased ability to suppress HCV replication.

conclusionThese data suggest that MDA-5 plays a significant role in the defense against HCV and that polymorphisms in MDA-5 can influence the outcome of HCV infection.

Indexed as

Case-Control StudiesDEAD-box RNA HelicasesFemaleHEK293 CellsHepacivirusHepatitis C, ChronicHost-Pathogen InteractionsHumansInterferon-Induced Helicase, IFIH1MalePolymorphism, GeneticRemission, SpontaneousDEAD-box RNA HelicasesIFIH1 protein, humanInterferon-Induced Helicase, IFIH1

Identifiers

PMID25130193
PMCPMC4315306
OpenAlexW1989993996

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.