Evidence map›Paper›PMID 25129434›Full record

ArticleVirology2014

Regulation of human genome expression and RNA splicing by human papillomavirus 16 E2 protein.

Elaine J Gauson, Brad Windle, Mary M Donaldson, Maria M Caffarel, Edward S Dornan, Nicholas Coleman, Pawel Herzyk, Scott C Henderson, Xu Wang, Iain M Morgan

Abstract read
In one paragraph

Article in Virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

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  18. Article
  19. Splicing and Polyadenylation of Human Papillomavirus Type 16 mRNAs.International journal of molecular sciences · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Elaine J GausonVCU Philips Institute for Oral Health Research, Virginia Commonwealth University School of Dentistry, Department of Oral and Craniofacial Molecular Biology, Richmond, VA 23298, USA; University of Glasgow Institute of Infection, Immunology and Inflammation, Glasgow G12 8QQ, UK.
Brad WindleVCU Philips Institute for Oral Health Research, Virginia Commonwealth University School of Dentistry, Department of Oral and Craniofacial Molecular Biology, Richmond, VA 23298, USA; Department of Hematology, Oncology, and Palliative Care, Virginia Commonwealth University School of Medicine, Richmond, VA 23298, USA; Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA.
Mary M DonaldsonUniversity of Glasgow Institute of Infection, Immunology and Inflammation, Glasgow G12 8QQ, UK.
Maria M CaffarelDepartment of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP, UK.
Edward S DornanUniversity of Glasgow Institute of Infection, Immunology and Inflammation, Glasgow G12 8QQ, UK.
Nicholas ColemanDepartment of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP, UK.
Pawel HerzykInstitute of Molecular Cell and Systems Biology, University of Glasgow, Glasgow G12 8QQ, UK; Glasgow Polyomics, University of Glasgow, UK.
Scott C HendersonDepartment of Anatomy and Neurobiology, Virginia Commonwealth University School of Medicine, Richmond, VA 23298, USA.
Xu WangVCU Philips Institute for Oral Health Research, Virginia Commonwealth University School of Dentistry, Department of Oral and Craniofacial Molecular Biology, Richmond, VA 23298, USA.
Iain M MorganVCU Philips Institute for Oral Health Research, Virginia Commonwealth University School of Dentistry, Department of Oral and Craniofacial Molecular Biology, Richmond, VA 23298, USA; University of Glasgow Institute of Infection, Immunology and Inflammation, Glasgow G12 8QQ, UK; Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298, USA. Electronic address: immorgan@vcu.edu.
Virginia Commonwealth University · USUniversity of Glasgow · GBUniversity of Cambridge · GB

Funding

Virus Vector Shared ResourceP30CA016059 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Keri R Maher · 1985 to 2026
$51.0M
Acquisition of a spinning disc confocal microscope for a core microscopy facilityS10RR027957 · NCRR · VIRGINIA COMMONWEALTH UNIVERSITY · PI HENDERSON, SCOTT C. · 2010 to 2010
$483k
Cancer Research UK 13080Medical Research Council MC_U105359875NCI NIH HHS P30 CA016059
6 · The paper itself

Abstract

Human papillomavirus 16 (HPV16) is causative in human cancer. The E2 protein regulates transcription from and replication of the viral genome; the role of E2 in regulating the host genome has been less well studied. We have expressed HPV16 E2 (E2) stably in U2OS cells; these cells tolerate E2 expression well and gene expression analysis identified 74 genes showing differential expression specific to E2. Analysis of published gene expression data sets during cervical cancer progression identified 20 of the genes as being altered in a similar direction as the E2 specific genes. In addition, E2 altered the splicing of many genes implicated in cancer and cell motility. The E2 expressing cells showed no alteration in cell growth but were altered in cell motility, consistent with the E2 induced altered splicing predicted to affect this cellular function. The results present a model system for investigating E2 regulation of the host genome.

Indexed as

Cell Line, TumorCell MovementDNA-Binding ProteinsGene Expression Regulation, ViralGenome, HumanHuman papillomavirus 16HumansOncogene Proteins, ViralPromoter Regions, GeneticRNA SplicingDNA-Binding ProteinsE2 protein, Human papillomavirus type 16Oncogene Proteins, ViralAffymetrixCervical cancerE2Exon-arrayHead and neck cancerHost genomePapillomavirusRegulationSplicingTranscription

Identifiers

PMID25129434
PMCPMC5584639
OpenAlexW1980142476

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.