Evidence map›Paper›PMID 25129018›Full record

ArticleComputers in biology and medicine2014

A computational pipeline for quantification of mouse myocardial stiffness parameters.

Oyvind Nordbø, Pablo Lamata, Sander Land, Steven Niederer, Jan M Aronsen, William E Louch, Ivar Sjaastad, Harald Martens, Arne B Gjuvsland, Kristin Tøndel and 7 more

Abstract read
In one paragraph

Article in Computers in biology and medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Modeling left ventricular dynamics with characteristic deformation modes.Biomechanics and modeling in mechanobiology · 2019
    Article
  4. In vivo estimation of elastic heterogeneity in an infarcted human heart.Biomechanics and modeling in mechanobiology · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Oyvind NordbøDepartment of Mathematical Sciences and Technology, Centre for Integrative Genetics, Norwegian University of Life Sciences, P.O. Box 5003, N-1432 Ås, Norway.
Pablo LamataDepartment of Biomedical Engineering, King's College London, St. Thomas׳ Hospital, Westminster Bridge Road, London SE17EH, UK.
Sander LandDepartment of Biomedical Engineering, King's College London, St. Thomas׳ Hospital, Westminster Bridge Road, London SE17EH, UK.
Steven NiedererDepartment of Biomedical Engineering, King's College London, St. Thomas׳ Hospital, Westminster Bridge Road, London SE17EH, UK.
Jan M AronsenInstitute for Experimental Medical Research, Oslo University Hospital Ullevål and University of Oslo, Kirkeveien 166, 4th Floor Building 7, 0407 Oslo, Norway; Bjørknes College, Oslo, Norway.
William E LouchInstitute for Experimental Medical Research, Oslo University Hospital Ullevål and University of Oslo, Kirkeveien 166, 4th Floor Building 7, 0407 Oslo, Norway; KG Jebsen Cardiac Research Center and Center for Heart Failure Research, University of Oslo, 0407 Oslo, Norway.
Ivar SjaastadInstitute for Experimental Medical Research, Oslo University Hospital Ullevål and University of Oslo, Kirkeveien 166, 4th Floor Building 7, 0407 Oslo, Norway.
Harald MartensDepartment of Engineering Cybernetics, Faculty of Information Technology, Mathematics and Electrical Engineering, Norwegian University of Science and Technology, Trondheim, Norway.
Arne B GjuvslandDepartment of Animal and Aquacultural Sciences, Centre for Integrative Genetics, Norwegian University of Life Sciences, P.O. Box 5003, N-1432 Ås, Norway.
Kristin TøndelDepartment of Biomedical Engineering, King's College London, St. Thomas׳ Hospital, Westminster Bridge Road, London SE17EH, UK.
Hans TorpDepartment of Circulation and Medical Imaging, Faculty of Medicine, Norwegian University of Science and Technology, Postboks 8905, Medisinsk teknisk forskningssenter, NO-7491 Trondheim, Norway.
Maelene LohezicRadcliffe Department of Medicine, Division of Cardiovascular Medicine, University of Oxford, Welcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford OX3 7BN, UK.
Jurgen E SchneiderDepartment of Circulation and Medical Imaging, Faculty of Medicine, Norwegian University of Science and Technology, Postboks 8905, Medisinsk teknisk forskningssenter, NO-7491 Trondheim, Norway.
Espen W RemmeKG Jebsen Cardiac Research Center and Center for Heart Failure Research, University of Oslo, 0407 Oslo, Norway; Institute for Surgical Research, Oslo University Hospital, Rikshospitalet, Oslo, Norway.
Nicolas SmithDepartment of Biomedical Engineering, King's College London, St. Thomas׳ Hospital, Westminster Bridge Road, London SE17EH, UK.
Stig W OmholtFaculty of Medicine, Norwegian University of Science and Technology, P.O. Box 8905, N-7491 Trondheim, Norway.
Jon Olav VikDepartment of Animal and Aquacultural Sciences, Centre for Integrative Genetics, Norwegian University of Life Sciences, P.O. Box 5003, N-1432 Ås, Norway. Electronic address: jonovik@gmail.com.

Funding

The Virtual Physiological Rat ProjectP50GM094503 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BEARD, DANIEL A · 2011 to 2015
$11.6M
British Heart Foundation FS/11/50/29038British Heart Foundation PG/11/101/29212NIGMS NIH HHS P50 GM094503Wellcome Trust 099973
6 · The paper itself

Abstract

The mouse is an important model for theoretical-experimental cardiac research, and biophysically based whole organ models of the mouse heart are now within reach. However, the passive material properties of mouse myocardium have not been much studied. We present an experimental setup and associated computational pipeline to quantify these stiffness properties. A mouse heart was excised and the left ventricle experimentally inflated from 0 to 1.44kPa in eleven steps, and the resulting deformation was estimated by echocardiography and speckle tracking. An in silico counterpart to this experiment was built using finite element methods and data on ventricular tissue microstructure from diffusion tensor MRI. This model assumed a hyperelastic, transversely isotropic material law to describe the force-deformation relationship, and was simulated for many parameter scenarios, covering the relevant range of parameter space. To identify well-fitting parameter scenarios, we compared experimental and simulated outcomes across the whole range of pressures, based partly on gross phenotypes (volume, elastic energy, and short- and long-axis diameter), and partly on node positions in the geometrical mesh. This identified a narrow region of experimentally compatible values of the material parameters. Estimation turned out to be more precise when based on changes in gross phenotypes, compared to the prevailing practice of using displacements of the material points. We conclude that the presented experimental setup and computational pipeline is a viable method that deserves wider application.

Indexed as

Computer SimulationModels, CardiovascularAnimalsBiomechanical PhenomenaDiffusion Magnetic Resonance ImagingElasticityFinite Element AnalysisHeartMiceVentricular FunctionMyocardial stiffnessParameter estimationPassive inflationSpeckle trackingTransversal isotropy

Identifiers

PMID25129018
PMCPMC4625543

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.