Evidence map›Paper›PMID 25128388›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops.

Tatsuya Maehigashi, Jack A Dunkle, Stacey J Miles, Christine M Dunham

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 71 citations in OpenAlex.

  1. Article
  2. Article
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  4. Suppressor tRNA in gene therapy.Science China. Life sciences · 2024
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  7. Tuning tRNAs for improved translation.Frontiers in genetics · 2024
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  8. Article
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  10. Structural and functional characterization of TrmM in mProtein science : a publication of the Protein Society · 2022
    Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Loss ofeLife · 2021
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tatsuya MaehigashiDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.
Jack A DunkleDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.
Stacey J MilesDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.
Christine M DunhamDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322 christine.m.dunham@emory.edu.
Emory University · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Structural Studies of Ribosome RegulationR01GM093278 · NIGMS · EMORY UNIVERSITY · PI DUNHAM, CHRISTINE M · 2010 to 2022
$4.6M
NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIGMS NIH HHS R01 GM093278NIGMS NIH HHS R01GM093278
6 · The paper itself

Abstract

Maintenance of the correct reading frame on the ribosome is essential for accurate protein synthesis. Here, we report structures of the 70S ribosome bound to frameshift suppressor tRNA(SufA6) and N1-methylguanosine at position 37 (m(1)G37) modification-deficient anticodon stem loop(Pro), both of which cause the ribosome to decode 4 rather than 3 nucleotides, resulting in a +1 reading frame. Our results reveal that decoding at +1 suppressible codons causes suppressor tRNA(SufA6) to undergo a rearrangement of its 5' stem that destabilizes U32, thereby disrupting the conserved U32-A38 base pair. Unexpectedly, the removal of the m(1)G37 modification of tRNA(Pro) also disrupts U32-A38 pairing in a structurally analogous manner. The lack of U32-A38 pairing provides a structural correlation between the transition from canonical translation and a +1 reading of the mRNA. Our structures clarify the molecular mechanism behind suppressor tRNA-induced +1 frameshifting and advance our understanding of the role played by the ribosome in maintaining the correct translational reading frame.

Indexed as

AnticodonCrystallography, X-RayEscherichia coliFrameshifting, RibosomalGenes, SuppressorInverted Repeat SequencesNucleic Acid ConformationRibosomesRNA, MessengerRNA, TransferSalmonella typhimuriumThermus thermophilusAnticodonRNA, MessengerRNA, Transfernear cognateprocessivity

Identifiers

PMID25128388
PMCPMC4156745
OpenAlexW2085123777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.