Evidence map›Paper›PMID 25127239›Full record

ArticlePloS one2014

Crystal structure of a complex of NOD1 CARD and ubiquitin.

Aaron M Ver Heul, Lokesh Gakhar, Robert C Piper, Ramaswamy Subramanian

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Flavonoid-rich extract of3 Biotech · 2018
    Article
  5. Article
  6. An updated view on the structure and function of PYRIN domains.Apoptosis : an international journal on programmed cell death · 2015
    Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Aaron M Ver HeulMolecular Physiology and Biophysics, University of Iowa, Iowa City, Iowa, United States of America; Department of Biochemistry, University of Iowa, Iowa City, Iowa, United States of America.
Lokesh GakharDepartment of Biochemistry, University of Iowa, Iowa City, Iowa, United States of America; Carver College of Medicine Protein Crystallography Facility, Iowa City, Iowa, United States of America.
Robert C PiperMolecular Physiology and Biophysics, University of Iowa, Iowa City, Iowa, United States of America.
Ramaswamy SubramanianDepartment of Biochemistry, University of Iowa, Iowa City, Iowa, United States of America; Institute for Stem Cell Biology and Regenerative Medicine, Bangalore, India.
University of Iowa · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Ubiquitin-Dependent Sorting in Endosomes and the TGNR01GM058202 · NIGMS · UNIVERSITY OF IOWA · PI PIPER, ROBERT C · 1998 to 2025
$8.9M
NIGMS NIH HHS R01 GM058202NIGMS NIH HHS T32 GM007337
6 · The paper itself

Abstract

The Caspase Recruitment Domain (CARD) from the innate immune receptor NOD1 was crystallized with Ubiquitin (Ub). NOD1 CARD was present as a helix-swapped homodimer similar to other structures of NOD1 CARD, and Ub monomers formed a homodimer similar in conformation to Lys48-linked di-Ub. The interaction between NOD1 CARD and Ub in the crystal was mediated by novel binding sites on each molecule. Comparisons of these sites to previously identified interaction surfaces on both molecules were made along with discussion of their potential functional significance.

Indexed as

Models, MolecularProtein ConformationProtein Interaction Domains and MotifsBinding SitesHumansNod1 Signaling Adaptor ProteinProtein BindingProtein MultimerizationProtein SubunitsUbiquitinNod1 Signaling Adaptor ProteinProtein SubunitsUbiquitin

Identifiers

PMID25127239
PMCPMC4134136
OpenAlexW2011410648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.