Evidence map›Paper›PMID 25127221›Full record

ArticleCurrent biology : CB2014

Rhythms in energy storage control the ability of the cyanobacterial circadian clock to reset.

Gopal K Pattanayak, Connie Phong, Michael J Rust

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
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  4. Article
  5. Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
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  9. Article
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  11. Clocking out and letting go to unleash green biotech applications in a photosynthetic host.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Circadian regulation of metabolism across photosynthetic organisms.The Plant journal : for cell and molecular biology · 2023
    Review
  16. Circadian entrainment of in vitro reactions, in real time, and around the clock.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Synchronization of the circadian clock to the environment tracked in real time.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. KidA, a multi-PAS domain protein, tunes the period of the cyanobacterial circadian oscillator.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Gopal K PattanayakDepartment of Molecular Genetics and Cell Biology, Institute for Genomics and Systems Biology, University of Chicago, 900 East 57(th) Street, Chicago, IL 60637, USA.
Connie PhongDepartment of Molecular Genetics and Cell Biology, Institute for Genomics and Systems Biology, University of Chicago, 900 East 57(th) Street, Chicago, IL 60637, USA.
Michael J RustDepartment of Molecular Genetics and Cell Biology, Institute for Genomics and Systems Biology, University of Chicago, 900 East 57(th) Street, Chicago, IL 60637, USA. Electronic address: mrust@uchicago.edu.
University of Chicago · US

Funding

Coupling between Circadian Rhythms and Metaboilsm in CyanobacteriaR01GM107369 · NIGMS · UNIVERSITY OF CHICAGO · PI RUST, MICHAEL · 2013 to 2017
$1.5M
NIGMS NIH HHS GM107369-01NIGMS NIH HHS R01 GM107369Wellcome Trust
6 · The paper itself

Abstract

Circadian clocks are oscillatory systems that schedule daily rhythms of organismal behavior. The ability of the clock to reset its phase in response to external signals is critical for proper synchronization with the environment. In the model clock from cyanobacteria, the KaiABC proteins that comprise the core oscillator are directly sensitive to metabolites. Reduced ATP/ADP ratio and oxidized quinones cause clock phase shifts in vitro. However, it is unclear what determines the metabolic response of the cell to darkness and thus the magnitude of clock resetting. We show that the cyanobacterial circadian clock generates a rhythm in metabolism that causes cells to accumulate glycogen in anticipation of nightfall. Mutation of the histidine kinase CikA creates an insensitive clock-input phenotype by misregulating clock output genome wide, leading to overaccumulation of glycogen and subsequently high ATP in the dark. Conversely, we show that disruption of glycogen metabolism results in low ATP in the dark and makes the clock hypersensitive to dark pulses. The observed changes in cellular energy are sufficient to recapitulate phase-shifting phenotypes in an in vitro model of the clock. Our results show that clock-input phenotypes can arise from metabolic dysregulation and illustrate a framework for circadian biology where clock outputs feed back through metabolism to control input mechanisms.

Indexed as

Biological ClocksCircadian RhythmEnergy MetabolismBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsGlycogenMutationOligonucleotide Array Sequence AnalysisSynechococcusBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsGlycogen

Identifiers

PMID25127221
PMCPMC4477845
OpenAlexW2046402343

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.