Evidence map›Paper›PMID 25127017›Full record

ArticlePloS one2014

HIV-1 replication in human immune cells is independent of TAR DNA binding protein 43 (TDP-43) expression.

Julia Nehls, Herwig Koppensteiner, Ruth Brack-Werner, Thomas Floss, Michael Schindler

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Implications of TDP-43 in non-neuronal systems.Cell communication and signaling : CCS · 2023
    Review
  5. TDP-43 Controls HIV-1 Viral Production and Virus Infectiveness.International journal of molecular sciences · 2023
    Article
  6. Review
  7. Article
  8. Trends in Understanding the Pathological Roles of TDP-43 and FUS Proteins.Advances in experimental medicine and biology · 2021
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Julia NehlsInstitute of Virology, Helmholtz Zentrum Munich, German Research Center for Environmental Health, Neuherberg, Germany.
Herwig KoppensteinerInstitute of Virology, Helmholtz Zentrum Munich, German Research Center for Environmental Health, Neuherberg, Germany.
Ruth Brack-WernerInstitute of Virology, Helmholtz Zentrum Munich, German Research Center for Environmental Health, Neuherberg, Germany.
Thomas FlossInstitute of Developmental Genetics, Helmholtz Zentrum Munich, German Research Center for Environmental Health, Neuherberg, Germany.
Michael SchindlerInstitute of Virology, Helmholtz Zentrum Munich, German Research Center for Environmental Health, Neuherberg, Germany; Institute of Medical Virology and Epidemiology of Viral Diseases, University Clinic Tübingen, Tübingen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The TAR DNA binding protein (TDP-43) was originally identified as a host cell factor binding to the HIV-1 LTR and thereby suppressing HIV-1 transcription and gene expression (Ou et al., J.Virol. 1995, 69(6):3584). TDP-43 is a global regulator of transcription, can influence RNA metabolism in many different ways and is ubiquitously expressed. Thus, TDP-43 could be a major factor restricting HIV-1 replication at the level of LTR transcription and gene expression. These facts prompted us to revisit the role of TDP-43 for HIV-1 replication. We utilized established HIV-1 cell culture systems as well as primary cell models and performed a comprehensive analysis of TDP-43 function and investigated its putative impact on HIV-1 gene expression. In HIV-1 infected cells TDP-43 was neither degraded nor sequestered from the nucleus. Furthermore, TDP-43 overexpression as well as siRNA mediated knockdown did not affect HIV-1 gene expression and virus production in T cells and macrophages. In summary, our experiments argue against a restricting role of TDP-43 during HIV-1 replication in immune cells.

Indexed as

Virus ReplicationDNA-Binding ProteinsGene ExpressionGene Expression Regulation, ViralGenes, ViralHEK293 CellsHIV-1HIV Long Terminal RepeatHumansJurkat CellsProtein TransportTranscriptional ActivationDNA-Binding ProteinsTARDBP protein, human

Identifiers

PMID25127017
PMCPMC4134290

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.