Evidence map›Paper›PMID 25126520›Full record

ArticleGenomics data2014

Gene expression signatures affected by ethanol and/or nicotine in normal human normal oral keratinocytes (NHOKs).

Jeffrey J Kim, Omar Khalid, Lewei Duan, Reuben Kim, David Elashoff, Yong Kim

Open access · goldAbstract read
In one paragraph

Article in Genomics data, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jeffrey J KimLaboratory of Stem Cell and Cancer Epigenetic Research, UCLA School of Dentistry, Los Angeles, CA, USA.
Omar KhalidLaboratory of Stem Cell and Cancer Epigenetic Research, UCLA School of Dentistry, Los Angeles, CA, USA.
Lewei DuanDepartment of Biostatistics and Medicine, UCLA School of Public Health, Los Angeles, CA, USA.
Reuben KimDivision of Oral Biology and Medicine, UCLA School of Dentistry, Los Angeles, CA, USA.
David ElashoffDepartment of Biostatistics and Medicine, UCLA School of Public Health, Los Angeles, CA, USA.
Yong KimLaboratory of Stem Cell and Cancer Epigenetic Research, UCLA School of Dentistry, Los Angeles, CA, USA ; Division of Oral Biology and Medicine, UCLA School of Dentistry, Los Angeles, CA, USA ; Center for Oral and Head/Neck Oncology Research Center, Los Angeles, CA, USA ; UCLA's Jonsson Comprehensive Cancer Center, Los Angeles, CA, USA ; UCLA Broad Stem Cell Research Center, Los Angeles, CA, USA.
University of California, Los Angeles · USUCLA Health · US

Funding

Alcohol-induced epigenetic alterations in human stem cellsR01AA021301 · NIAAA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KIM, YONG · 2011 to 2013
$1.0M
NIAAA NIH HHS R01 AA021301
6 · The paper itself

Abstract

It has been reported that nicotine/alcohol alter epigenetic control and lead to abrogated DNA methylation and histone modifications, which could subsequently perturb transcriptional regulation critically important in cellular transformation. The aim of this study is to determine the molecular mechanisms of nicotine/alcohol-induced epigenetic alterations and their mechanistic roles in transcriptional regulation in human adult stem cells. We hypothesized that nicotine/alcohol induces deregulation of epigenetic machinery and leads to epigenetic alterations, which subsequently affect transcriptional regulation in oral epithelial stem cells. As an initiating step we have profiled transcriptomic alterations induced by combinatory administration of EtOH and nicotine in primary normal human oral keratinocytes. Here we provide detailed experimental methods, analysis and information associated with our data deposited into Gene Expression Omnibus (GEO) under GSE57634. Our data provide comprehensive transcriptomic map describing molecular changes induced by EtOH and nicotine on normal human oral keratinocytes.

Identifiers

PMID25126520
PMCPMC4127651
OpenAlexW2078189354

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.