ArticleDatabase : the journal of biological databases and curation2014
PlantCAZyme: a database for plant carbohydrate-active enzymes.
Article in Database : the journal of biological databases and curation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 32 citations in OpenAlex.
- Transcriptome study ofMicrobiology spectrum · 2026Article
- Enzyme Databases in the Era of Omics and Artificial Intelligence.International journal of molecular sciences · 2023Review
- A Genomic Perspective on the Evolutionary Diversity of the Plant Cell Wall.Plants (Basel, Switzerland) · 2020Review
- Insights into the mechanism of cyanobacteria removal by the algicidal fungi Bjerkandera adusta and Trametes versicolor.MicrobiologyOpen · 2020Article
- RedoxiBase: A database for ROS homeostasis regulated proteins.Redox biology · 2019Article
- Genome-Wide Identification and Characterization of Glycosyltransferase Family 47 in Cotton.Frontiers in genetics · 2019Article
- dbCAN2: a meta server for automated carbohydrate-active enzyme annotation.Nucleic acids research · 2018Article
- dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation.Nucleic acids research · 2018Article
- Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement.Frontiers in plant science · 2018Review
- The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.Nature communications · 2017Article
- Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis.BMC genomics · 2017Article
- Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function.BMC bioinformatics · 2017Article
- Loss of Inositol Phosphorylceramide Sphingolipid Mannosylation Induces Plant Immune Responses and Reduces Cellulose Content in Arabidopsis.The Plant cell · 2016Article
- Article
- Glycosylation Is a Major Regulator of Phenylpropanoid Availability and Biological Activity in Plants.Frontiers in plant science · 2016Review
- Aspergillus nidulans protein kinase A plays an important role in cellulase production.Biotechnology for biofuels · 2015Article
- Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae.PloS one · 2015Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PlantCAZyme is a database built upon dbCAN (database for automated carbohydrate active enzyme annotation), aiming to provide pre-computed sequence and annotation data of carbohydrate active enzymes (CAZymes) to plant carbohydrate and bioenergy research communities. The current version contains data of 43,790 CAZymes of 159 protein families from 35 plants (including angiosperms, gymnosperms, lycophyte and bryophyte mosses) and chlorophyte algae with fully sequenced genomes. Useful features of the database include: (i) a BLAST server and a HMMER server that allow users to search against our pre-computed sequence data for annotation purpose, (ii) a download page to allow batch downloading data of a specific CAZyme family or species and (iii) protein browse pages to provide an easy access to the most comprehensive sequence and annotation data. DATABASE URL: http://cys.bios.niu.edu/plantcazyme/
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.