Evidence map›Paper›PMID 25124042›Full record

ArticleThe Journal of biological chemistry2014

Crystal structure of the ubiquitin-like domain-CUT repeat-like tandem of special AT-rich sequence binding protein 1 (SATB1) reveals a coordinating DNA-binding mechanism.

Zheng Wang, Xue Yang, Shuang Guo, Yin Yang, Xun-Cheng Su, Yuequan Shen, Jiafu Long

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A novel SATB1 protein isoform with different biophysical properties.Frontiers in cell and developmental biology · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Zheng WangFrom the State Key Laboratory of Medicinal Chemical Biology, the College of Life Sciences, and.
Xue YangFrom the State Key Laboratory of Medicinal Chemical Biology, the College of Life Sciences, and.
Shuang GuoFrom the State Key Laboratory of Medicinal Chemical Biology.
Yin Yangthe State Key Laboratory of Elemento-organic Chemistry, Nankai University and.
Xun-Cheng Suthe State Key Laboratory of Elemento-organic Chemistry, Nankai University and.
Yuequan ShenFrom the State Key Laboratory of Medicinal Chemical Biology, the College of Life Sciences, and the Synergetic Innovation Center of Chemical Science and Engineering, Tianjin 300071, China shenyuequan@gmail.com.
Jiafu LongFrom the State Key Laboratory of Medicinal Chemical Biology, the College of Life Sciences, and jflong@nankai.edu.cn.
State Key Laboratory of Chemical Engineering · CNNankai University · CNState Key Laboratory of Medicinal Chemical Biology

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SATB1 is essential for T-cell development and growth and metastasis of multitype tumors and acts as a global chromatin organizer and gene expression regulator. The DNA binding ability of SATB1 plays vital roles in its various biological functions. We report the crystal structure of the N-terminal module of SATB1. Interestingly, this module contains a ubiquitin-like domain (ULD) and a CUT repeat-like (CUTL) domain (ULD-CUTL tandem). Detailed biochemical experiments indicate that the N terminus of SATB1 (residues 1-248, SATB1((1-248))), including the extreme 70 N-terminal amino acids, and the ULD-CUTL tandem bind specifically to DNA targets. Our results show that the DNA binding ability of full-length SATB1 requires the contribution of the CUTL domain, as well as the CUT1-CUT2 tandem domain and the homeodomain. These findings may reveal a multiple-domain-coordinated mechanism whereby SATB1 recognizes DNA targets.

Indexed as

Amino Acid SequenceAnimalsAT Rich SequenceCrystallography, X-RayDNADNA-Binding ProteinsMatrix Attachment Region Binding ProteinsMiceModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, TertiarySequence AlignmentUbiquitinDNADNA-Binding ProteinsMatrix Attachment Region Binding ProteinsSatb1 protein, mouseUbiquitinChromatin RegulationCoordination MechanismCrystal StructureCUTL DomainDNA BindingDNA-binding ProteinGene RegulationGlobal Gene RegulationSATB1Scaffold Protein

Identifiers

PMID25124042
PMCPMC4183778
OpenAlexW2055611853

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.