Evidence map›Paper›PMID 25124035›Full record

ArticleThe Journal of biological chemistry2014

Systematic analysis of bacterial effector-postsynaptic density 95/disc large/zonula occludens-1 (PDZ) domain interactions demonstrates Shigella OspE protein promotes protein kinase C activation via PDLIM proteins.

Chae-ryun Yi, John E Allen, Brian Russo, Soo Young Lee, Jason E Heindl, Leigh A Baxt, Bobby Brooke Herrera, Emily Kahoud, Gavin MacBeath, Marcia B Goldberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

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  4. Modulation ofmBio · 2024
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  6. The unexpected versatility of ALP/Enigma family proteins.Frontiers in cell and developmental biology · 2022
    Review
  7. Manipulation of Focal Adhesion Signaling by Pathogenic Microbes.International journal of molecular sciences · 2021
    Review
  8. Article
  9. Frontiers in cellular and infection microbiology · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Chae-ryun YiFrom the Division of Infectious Diseases, Massachusetts General Hospital, Cambridge, Massachusetts 02139.
John E Allenthe Department of Chemistry and Chemical Biology, Harvard University, Cambridge, Massachusetts 02138, and.
Brian RussoFrom the Division of Infectious Diseases, Massachusetts General Hospital, Cambridge, Massachusetts 02139, Departments of Microbiology and Immunobiology and.
Soo Young Leethe Program in Immunology and.
Jason E HeindlDepartments of Microbiology and Immunobiology and.
Leigh A BaxtFrom the Division of Infectious Diseases, Massachusetts General Hospital, Cambridge, Massachusetts 02139.
Bobby Brooke HerreraFrom the Division of Infectious Diseases, Massachusetts General Hospital, Cambridge, Massachusetts 02139.
Emily KahoudFrom the Division of Infectious Diseases, Massachusetts General Hospital, Cambridge, Massachusetts 02139.
Gavin MacBeathSystems Biology, Harvard Medical School, Boston, Massachusetts 02115.
Marcia B GoldbergFrom the Division of Infectious Diseases, Massachusetts General Hospital, Cambridge, Massachusetts 02139, Departments of Microbiology and Immunobiology and marcia.goldberg@mgh.harvard.edu.
Massachusetts General Hospital · USHarvard University · USCenter for Systems Biology · US

Funding

INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
Molecular signaling in Shigella disseminationR01AI081724 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 2010 to 2026
$7.1M
Molecular Mechanisms of Modulation of N-WASP activityF32AI092967 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI BAXT, LEIGH A. · 2011 to 2013
$142k
NIAID NIH HHS F32 AI092967NIAID NIH HHS R01 AI081724NIAID NIH HHS T32 AI007061
6 · The paper itself

Abstract

Diseases caused by many Gram-negative bacterial pathogens depend on the activities of bacterial effector proteins that are delivered into eukaryotic cells via specialized secretion systems. Effector protein function largely depends on specific subcellular targeting and specific interactions with cellular ligands. PDZ domains are common domains that serve to provide specificity in protein-protein interactions in eukaryotic systems. We show that putative PDZ-binding motifs are significantly enriched among effector proteins delivered into mammalian cells by certain bacterial pathogens. We use PDZ domain microarrays to identify candidate interaction partners of the Shigella flexneri effector proteins OspE1 and OspE2, which contain putative PDZ-binding motifs. We demonstrate in vitro and in cells that OspE proteins interact with PDLIM7, a member of the PDLIM family of proteins, which contain a PDZ domain and one or more LIM domains, protein interaction domains that participate in a wide variety of functions, including activation of isoforms of protein kinase C (PKC). We demonstrate that activation of PKC during S. flexneri infection is attenuated in the absence of PDLIM7 or OspE proteins and that the OspE PDZ-binding motif is required for wild-type levels of PKC activation. These results are consistent with a model in which binding of OspE to PDLIM7 during infection regulates the activity of PKC isoforms that bind to the PDLIM7 LIM domain.

Indexed as

Protein Interaction Domains and MotifsAdaptor Proteins, Signal TransducingAmino Acid MotifsAmino Acid SequenceBacterial ProteinsConserved SequenceCytoskeletal ProteinsFocal AdhesionsHEK293 CellsHeLa CellsHumansIntracellular SpaceLIM Domain ProteinsMolecular Sequence DataMutant ProteinsPeptidesAdaptor Proteins, Signal TransducingBacterial ProteinsCytoskeletal ProteinsLIM Domain ProteinsMutant ProteinsPDLIM7 protein, humanPeptidesProtein Kinase CBacterial PathogenesisOspEPDLIM ProteinsPDZ DomainProtein Kinase C (PKC)Protein-Protein InteractionSecretionShigellaType III Secretion System (T3SS)

Identifiers

PMID25124035
PMCPMC4208017
OpenAlexW2005027841

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.