Evidence map›Paper›PMID 25122677›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Genetic-epigenetic dysregulation of thymic TSH receptor gene expression triggers thyroid autoimmunity.

Mihaela Stefan, Chengguo Wei, Angela Lombardi, Cheuk Wun Li, Erlinda S Concepcion, William B Inabnet, Randall Owen, Weijia Zhang, Yaron Tomer

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Genetics and epigenetics of autoimmune thyroid diseases: Translational implications.Best practice & research. Clinical endocrinology & metabolism · 2023
    Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Epigenetic Regulations of AhR in the Aspect of Immunomodulation.International journal of molecular sciences · 2020
    Review
  16. Graves' disease.Nature reviews. Disease primers · 2020
    Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Mihaela StefanDivision of Endocrinology and James J. Peters Veterans Administration Medical Center, Bronx, NY 10468.
Chengguo WeiDepartments of Medicine Bioinformatics Core and.
Angela LombardiDivision of Endocrinology and.
Cheuk Wun LiDivision of Endocrinology and.
Erlinda S ConcepcionDivision of Endocrinology and.
William B InabnetSurgery, Icahn School of Medicine at Mount Sinai, New York, NY 10029; and.
Randall OwenSurgery, Icahn School of Medicine at Mount Sinai, New York, NY 10029; and.
Weijia ZhangDepartments of Medicine Bioinformatics Core and.
Yaron TomerDivision of Endocrinology and James J. Peters Veterans Administration Medical Center, Bronx, NY 10468 yaron.tomer@mssm.edu.

Funding

Mapping Autoimmune Diabetes and Thyroiditis GenesR01DK067555 · NIDDK · UNIVERSITY OF CINCINNATI · PI MIHAELA STEFAN LIFSHITZ, YARON TOMER · 2005 to 2026
$5.8M
Thyroid Derived Peptide Presentation by HLA-DR in ThyroiditisR01DK073681 · NIDDK · UNIVERSITY OF CINCINNATI · PI TOMER, YARON · 2006 to 2022
$5.0M
Identifying Genes Linked to Autoimmune Thyroid DiseasesR01DK061659 · NIDDK · UNIVERSITY OF CINCINNATI · PI TOMER, YARON · 2002 to 2017
$4.1M
Drug and Viral Induced Thyroiditis and DiabetesI01BX002031 · VA · JAMES J PETERS VA MEDICAL CENTER · PI TOMER, YARON · 2013 to 2015
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BLRD VA I01 BX002031NIDDK NIH HHS DK061659NIDDK NIH HHS DK067555NIDDK NIH HHS DK073681NIDDK NIH HHS R01 DK061659NIDDK NIH HHS R01 DK067555NIDDK NIH HHS R01 DK073681
6 · The paper itself

Abstract

Graves disease (GD) is an autoimmune condition caused by interacting genetic and environmental factors. Genetic studies have mapped several single-nucleotide polymorphisms (SNPs) that are strongly associated with GD, but the mechanisms by which they trigger disease are unknown. We hypothesized that epigenetic modifications induced by microenvironmental influences of cytokines can reveal the functionality of GD-associated SNPs. We analyzed genome-wide histone H3 lysine 4 methylation and gene expression in thyroid cells induced by IFNα, a key cytokine secreted during viral infections, and overlapped them with known GD-associated SNPs. We mapped an open chromatin region overlapping two adjacent GD-associated SNPs (rs12101255 and rs12101261) in intron 1 of the thyroid stimulating hormone receptor (TSHR) gene. We then demonstrated that this region functions as a regulatory element through binding of the transcriptional repressor promyelocytic leukemia zinc finger protein (PLZF) at the rs12101261 site. Repression by PLZF depended on the rs12101261 disease susceptibility allele and was increased by IFNα. Intrathymic TSHR expression was decreased in individuals homozygous for the rs12101261 disease-associated genotype compared with carriers of the disease-protective allele. Our studies discovered a genetic-epigenetic interaction involving a noncoding SNP in the TSHR gene that regulates thymic TSHR gene expression and facilitates escape of TSHR-reactive T cells from central tolerance, triggering GD.

Indexed as

AutoimmunityBinding SitesCell LineEpigenesis, GeneticGene-Environment InteractionGene Expression RegulationGraves DiseaseHistonesHumansInterferon-alphaIntronsKruppel-Like Transcription FactorsMethylationPolymorphism, Single NucleotidePromoter Regions, GeneticPromyelocytic Leukemia Zinc Finger ProteinHistonesInterferon-alphaKruppel-Like Transcription FactorsPromyelocytic Leukemia Zinc Finger ProteinReceptors, ThyrotropinRNA, MessengerZBTB16 protein, humanhistone modificationsinterferonthyroiditis

Identifiers

PMID25122677
PMCPMC4151767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.