Evidence map›Paper›PMID 25122473›Full record

ArticlePlant physiology2014

The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice.

Nilda Roma Burgos, Vijay Singh, Te Ming Tseng, Howard Black, Nelson D Young, Zhongyun Huang, Katie E Hyma, David R Gealy, Ana L Caicedo

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 114 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Nilda Roma BurgosDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Vijay SinghDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Te Ming TsengDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Howard BlackDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Nelson D YoungDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Zhongyun HuangDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Katie E HymaDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
David R GealyDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.).
Ana L CaicedoDepartment of Crop, Soil, and Environmental Sciences, University of Arkansas, Fayetteville, Arkansas 72704 (N.R.B., V.S., T.M.T.);United States Department of Agriculture Agricultural Research Service, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas 72160 (H.B., D.R.G.); andBiology Department, University of Massachusetts, Amherst, Massachusetts 01003 (N.D.Y., Z.H., K.E.H., A.L.C.) caicedo@bio.umass.edu.
University of Massachusetts Amherst · USUniversity of Arkansas at Fayetteville · USAgricultural Research Service · USUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the past 12 years to constitute about 60% of rice acreage in Arkansas, where most U.S. rice is grown. To assess the impact of HR cultivated rice on the herbicide resistance and population structure of weedy rice, weedy samples were collected from commercial fields with a history of Clearfield rice. Panicles from each weedy type were harvested and tested for resistance to imazethapyr. The majority of plants sampled had at least 20% resistant offspring. These resistant weeds were 97 to 199 cm tall and initiated flowering from 78 to 128 d, generally later than recorded for accessions collected prior to the widespread use of Clearfield rice (i.e. historical accessions). Whereas the majority (70%) of historical accessions had straw-colored hulls, only 30% of contemporary HR weedy rice had straw-colored hulls. Analysis of genotyping-by-sequencing data showed that HR weeds were not genetically structured according to hull color, whereas historical weedy rice was separated into straw-hull and black-hull populations. A significant portion of the local rice crop genome was introgressed into HR weedy rice, which was rare in historical weedy accessions. Admixture analyses showed that HR weeds tend to possess crop haplotypes in the portion of chromosome 2 containing the ACETOLACTATE SYNTHASE gene, which confers herbicide resistance to Clearfield rice. Thus, U.S. HR weedy rice is a distinct population relative to historical weedy rice and shows modifications in morphology and phenology that are relevant to weed management.

Indexed as

Genetic VariationHerbicide ResistanceCrops, AgriculturalDemographyEvolution, MolecularGenotypeHaplotypesHerbicidesOryzaPhenotypeSequence Analysis, DNAUnited StatesHerbicides

Identifiers

PMID25122473
PMCPMC4226343
OpenAlexW2151338018

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.