ArticlePloS one2014
De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed.
- Gene Expression Profiling of Transcription Factors and Acclimation-Related Genes inInternational journal of molecular sciences · 2025Article
- Genome-Wide Identification of Candidate Genes Associated with Heat Stress in Mulberry (Current issues in molecular biology · 2023Article
- Comparative transcriptome analysis reveals the regulatory mechanisms of two tropical water lilies in response to cold stress.BMC genomics · 2023Article
- Genome-wide identification of members of thePhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Transcriptome Profiling in Leaves of Wheat Genotype under Heat Stress.Plants (Basel, Switzerland) · 2022Article
- Whole Transcriptome Analyses of Apricots and Japanese Plum Fruits after 1-MCP (Ethylene-Inhibitor) and Ethrel (Ethylene-Precursor) Treatments Reveal New Insights into the Physiology of the Ripening Process.International journal of molecular sciences · 2022Article
- Identification and profiling of conserved microRNAs in different developmental stages of crown imperial (Fritillaria imperialis L.) using high-throughput sequencing.Molecular biology reports · 2022Article
- Physiological Analysis and Transcriptome Sequencing Reveal the Effects of Salt Stress on Banana (Frontiers in plant science · 2022Article
- Computational screening of miRNAs and their targets in saffron (Crocus sativus L.) by transcriptome mining.Planta · 2021Article
- Interaction of gibberellin and other hormones in almond anthers: phenotypic and physiological changes and transcriptomic reprogramming.Horticulture research · 2021Article
- Developmental transcriptome profiling uncovered carbon signaling genes associated with almond fruit drop.Scientific reports · 2021Article
- Understanding the molecular mechanism of anther development under abiotic stresses.Plant molecular biology · 2021Review
- Physiological and transcriptome analysis of Poa pratensis var. anceps cv. Qinghai in response to cold stress.BMC plant biology · 2020Article
- Molecular bases of responses to abiotic stress in trees.Journal of experimental botany · 2020Review
- Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut.PloS one · 2020Article
- Gene expression profile indicates involvement of uniconazole inFood science & nutrition · 2020Article
- Transcriptome Analysis of Young Ovaries Reveals Candidate Genes Involved in Gamete Formation inPlants (Basel, Switzerland) · 2019Article
- De novo transcriptome sequencing and gene expression profiling of Magnolia wufengensis in response to cold stress.BMC plant biology · 2019Article
- Transcriptome response of roots to salt stress in a salinity-tolerant bread wheat cultivar.PloS one · 2019Article
- Transcriptome profiling of fully open flowers in a frost-tolerant almond genotype in response to freezing stress.Molecular genetics and genomics : MGG · 2018Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Almond (Prunus dulcis Mill.), one of the most important nut crops, requires chilling during winter to develop fruiting buds. However, early spring chilling and late spring frost may damage the reproductive tissues leading to reduction in the rate of productivity. Despite the importance of transcriptional changes and regulation, little is known about the almond's transcriptome under the cold stress conditions. In the current research, we used RNA-seq technique to study the response of the reproductive tissues of almond (anther and ovary) to frost stress. RNA sequencing resulted in more than 20 million reads from anther and ovary tissues of almond, individually. About 40,000 contigs were assembled and annotated de novo in each tissue. Profile of gene expression in ovary showed significant alterations in 5,112 genes, whereas in anther 6,926 genes were affected by freezing stress. Around two thousands of these genes were common altered genes in both ovary and anther libraries. Gene ontology indicated the involvement of differentially expressed (DE) genes, responding to freezing stress, in metabolic and cellular processes. qRT-PCR analysis verified the expression pattern of eight genes randomly selected from the DE genes. In conclusion, the almond gene index assembled in this study and the reported DE genes can provide great insights on responses of almond and other Prunus species to abiotic stresses. The obtained results from current research would add to the limited available information on almond and Rosaceae. Besides, the findings would be very useful for comparative studies as the number of DE genes reported here is much higher than that of any previous reports in this plant.
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