Evidence map›Paper›PMID 25121643›Full record

ArticleThe journal of physical chemistry. B2014

Sodium dodecyl sulfate monomers induce XAO peptide polyproline II to α-helix transition.

Zhenmin Hong, Krishnan Damodaran, Sanford A Asher

Abstract read
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Article in The journal of physical chemistry. B, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

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0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

3 authors.

Zhenmin HongDepartment of Chemistry, University of Pittsburgh , Pittsburgh, Pennsylvania 15260, United States.
Krishnan Damodaran
Sanford A Asher

Funding

Ultrahigh Throughput Deep UV Raman Spectrometer for Probing Protein StructureR01EB009089 · NIBIB · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ASHER, SANFORD A. · 2008 to 2011
$1.3M
NIBIB NIH HHS 1R01 EB009089NIBIB NIH HHS R01 EB009089
6 · The paper itself

Abstract

XAO peptide (Ac-X2A7O2-NH2; X: diaminobutyric acid side chain, -CH2CH2NH3(+); O: ornithine side chain, -CH2CH2CH2NH3(+)) in aqueous solution shows a predominantly polyproline II (PPII) conformation without any detectable α-helix-like conformations. Here we demonstrate by using circular dichroism (CD), ultraviolet resonance Raman (UVRR) and nuclear magnetic resonance (NMR) spectroscopy that sodium dodecyl sulfate (SDS) monomers bind to XAO and induce formation of α-helix-like conformations. The stoichiometry and the association constants of SDS and XAO were determined from the XAO-SDS diffusion coefficients measured by pulsed field gradient NMR. We developed a model for the formation of XAO-SDS aggregate α-helix-like conformations. Using UVRR spectroscopy, we calculated the Ramachandran ψ angle distributions of aggregated XAO peptides. We resolved α-, π- and 3(10)-helical conformations and a turn conformation. XAO nucleates SDS aggregation at SDS concentrations below the SDS critical micelle concentration. The XAO4-SDS16 aggregates have four SDS molecules bound to each XAO to neutralize the four side chain cationic charges. We propose that the SDS alkyl chains partition into a hydrophobic core to minimize the hydrophobic area exposed to water. Neutralization of the flanking XAO charges enables α-helix formation. Four XAO-SDS4 aggregates form a complex with an SDS alkyl chain-dominated hydrophobic core and a more hydrophilic shell where one face of the α-helix peptide contacts the water environment.

Indexed as

AlgorithmsCircular DichroismDiffusionHydrophobic and Hydrophilic InteractionsMagnetic Resonance SpectroscopyModels, MolecularPeptidesProtein Structure, SecondarySodium Dodecyl SulfateSolventsSpectrum Analysis, RamanSurface-Active AgentsWaterPeptidespolyprolineSodium Dodecyl SulfateSolventsSurface-Active AgentsWater

Identifiers

PMID25121643
PMCPMC4161145

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.