Evidence map›Paper›PMID 25121591›Full record

ArticlePloS one2014

DNA binding and condensation properties of the herpes simplex virus type 1 triplex protein VP19C.

Alakesh Bera, Edward M Perkins, Jian Zhu, Heng Zhu, Prashant Desai

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alakesh BeraViral Oncology Program, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Johns Hopkins University, Baltimore, Maryland, United States of America.
Edward M PerkinsDepartment of Biology and Integrated Imaging Center, Johns Hopkins University, Baltimore, Maryland, United States of America.
Jian ZhuHiT Center and Department of Pharmacology and Molecular Sciences, Johns Hopkins University, Baltimore, Maryland, United States of America.
Heng ZhuHiT Center and Department of Pharmacology and Molecular Sciences, Johns Hopkins University, Baltimore, Maryland, United States of America.
Prashant DesaiViral Oncology Program, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Johns Hopkins University, Baltimore, Maryland, United States of America.

Funding

MOLECULAR GENETICS OF HSV-1 CAPSIDSR01AI033077 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DESAI, PRASHANT · 1994 to 2007
$2.5M
Maturation functions of the HSV-1 tegumentR01AI061382 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DESAI, PRASHANT J · 2006 to 2010
$1.8M
Structural Protein Networks ("Interactome") in HerpesvirusesR21AI070740 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ZHU, HENG · 2006 to 2007
$443k
How does the KSHV small capsid protein function to promote self-assembly?R21AI107530 · NIAID · JOHNS HOPKINS UNIVERSITY · PI DESAI, PRASHANT J · 2013 to 2014
$431k
NIAID NIH HHS AI033077NIAID NIH HHS AI061382NIAID NIH HHS AI070740NIAID NIH HHS R01 AI033077NIAID NIH HHS R01 AI061382NIAID NIH HHS R21 AI070740NIAID NIH HHS R21 AI107530
6 · The paper itself

Abstract

Herpesvirus capsids are regular icosahedrons with a diameter of a 125 nm and are made up of 162 capsomeres arranged on a T = 16 lattice. The capsomeres (VP5) interact with the triplex structure, which is a unique structural feature of herpesvirus capsid shells. The triplex is a heterotrimeric complex; one molecule of VP19C and two of VP23 form a three-pronged structure that acts to stabilize the capsid shell through interactions with adjacent capsomeres. VP19C interacts with VP23 and with the major capsid protein VP5 and is required for the nuclear localization of VP23. Mutation of VP19C results in the abrogation of capsid shell synthesis. Analysis of the sequence of VP19C showed the N-terminus of VP19C is very basic and glycine rich. It was hypothesized that this domain could potentially bind to DNA. In this study an electrophoretic mobility shift assay (EMSA) and a DNA condensation assay were performed to demonstrate that VP19C can bind DNA. Purified VP19C was able to bind to both a DNA fragment of HSV-1 origin as well as a bacterial plasmid sequence indicating that this activity is non-specific. Ultra-structural imaging of the nucleo-protein complexes revealed that VP19C condensed the DNA and forms toroidal DNA structures. Both the DNA binding and condensing properties of VP19C were mapped to the N-terminal 72 amino acids of the protein. Mutational studies revealed that the positively charged arginine residues in this N-terminal domain are required for this binding. This DNA binding activity, which resides in a non-conserved region of the protein could be required for stabilization of HSV-1 DNA association in the capsid shell.

Indexed as

ArginineCapsidCapsid ProteinsDNA-Binding ProteinsDNA, ViralGlycineHerpesvirus 1, HumanPlasmidsRecombinant Fusion ProteinsSequence Analysis, ProteinArginineCapsid ProteinsDNA-Binding ProteinsDNA, ViralGlycineRecombinant Fusion ProteinsVP19 protein, Human herpesvirus 1

Identifiers

PMID25121591
PMCPMC4133253

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.