Evidence map›Paper›PMID 25120272›Full record

ArticleNucleic acids research2014

Syntheses and characterizations of the in vivo replicative bypass and mutagenic properties of the minor-groove O2-alkylthymidine lesions.

Qianqian Zhai, Pengcheng Wang, Qian Cai, Yinsheng Wang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Metabolic Activation and DNA Interactions of CarcinogenicInternational journal of molecular sciences · 2022
    Review
  5. DNA Polymerase II Supports the Replicative Bypass ofChemical research in toxicology · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. DNA replication studies ofThe Journal of biological chemistry · 2019
    Article
  12. Cytotoxic and mutagenic properties ofThe Journal of biological chemistry · 2018
    Article
  13. Article
  14. Cytotoxic and mutagenic properties of minor-grooveThe Journal of biological chemistry · 2018
    Article
  15. Article
  16. Chemical Analysis of DNA Damage.Analytical chemistry · 2018
    Review
  17. Article
  18. DNA Polymerase ν Rapidly Bypasses OChemical research in toxicology · 2016
    Article
  19. Replicative Bypass of OChemical research in toxicology · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Qianqian ZhaiDepartment of Chemistry, University of California, Riverside, CA 92521, USA.
Pengcheng WangEnvironmental Toxicology Graduate Program, University of California, Riverside, CA 92521, USA.
Qian CaiEnvironmental Toxicology Graduate Program, University of California, Riverside, CA 92521, USA.
Yinsheng WangDepartment of Chemistry, University of California, Riverside, CA 92521, USA Environmental Toxicology Graduate Program, University of California, Riverside, CA 92521, USA yinsheng.wang@ucr.edu.
University of California, Riverside · US

Funding

Repair and Biological Consequences of Alkylated Thymidine LesionsR01ES025121 · NIEHS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI WANG, YINSHENG · 2015 to 2019
$2.2M
NIEHS NIH HHS R01 ES025121
6 · The paper itself

Abstract

Endogenous metabolism, environmental exposure, and treatment with some chemotherapeutic agents can all give rise to DNA alkylation, which can occur on the phosphate backbone as well as the ring nitrogen or exocyclic nitrogen and oxygen atoms of nucleobases. Previous studies showed that the minor-groove O(2)-alkylated thymidine (O(2)-alkyldT) lesions are poorly repaired and persist in mammalian tissues. In the present study, we synthesized oligodeoxyribonucleotides harboring seven O(2)-alkyldT lesions, with the alkyl group being a Me, Et, nPr, iPr, nBu, iBu or sBu, at a defined site and examined the impact of these lesions on DNA replication in Escherichia coli cells. Our results demonstrated that the replication bypass efficiencies of the O(2)-alkyldT lesions decreased with the chain length of the alkyl group, and these lesions directed promiscuous nucleotide misincorporation in E. coli cells. We also found that deficiency in Pol V, but not Pol II or Pol IV, led to a marked drop in bypass efficiencies for most O(2)-alkyldT lesions. We further showed that both Pol IV and Pol V were essential for the misincorporation of dCMP opposite these minor-groove DNA lesions, whereas only Pol V was indispensable for the T→A transversion introduced by these lesions. Depletion of Pol II, however, did not lead to any detectable alterations in mutation frequencies for any of the O(2)-alkyldT lesions. Thus, our study provided important new knowledge about the cytotoxic and mutagenic properties of the O(2)-alkyldT lesions and revealed the roles of the SOS-induced DNA polymerases in bypassing these lesions in E. coli cells.

Indexed as

DNA DamageDNA ReplicationMutagenesisAlkylationDNADNA-Directed DNA PolymeraseEscherichia coliMutation RateNucleic Acid ConformationThymineDNADNA-Directed DNA PolymeraseThymine

Identifiers

PMID25120272
PMCPMC4176383
OpenAlexW2051155155

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.