ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2014
An extensive analysis of the African rice genetic diversity through a global genotyping.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed.
- Molecular Labelling Tool for Cereal Genetic Resources Management Derived from Barley and Tetraploid Wheat Genebank-Genomics Projects.Plants (Basel, Switzerland) · 2026Article
- African Cultivated, Wild and Weedy Rice (Biology · 2024Review
- Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud.G3 (Bethesda, Md.) · 2023Article
- FrangiPANe, a tool for creating a panreference using left behind reads.NAR genomics and bioinformatics · 2023Article
- Supporting in situ conservation of the genetic diversity of crop wild relatives using genomic technologies.Molecular ecology · 2022Review
- Development and validation of diagnostic SNP markers for quality control genotyping in a collection of four rice (Oryza) species.Scientific reports · 2021Article
- Genetics and Genomics of African Rice (Oryza glaberrima Steud) Domestication.Rice (New York, N.Y.) · 2021Review
- Comparisons of sampling methods for assessing intra- and inter-accession genetic diversity in three rice species using genotyping by sequencing.Scientific reports · 2020Article
- Allele mining unlocks the identification of RYMV resistance genes and alleles in African cultivated rice.BMC plant biology · 2020Article
- Development of diagnostic SNP markers for quality assurance and control in sweetpotato [Ipomoea batatas (L.) Lam.] breeding programs.PloS one · 2020Article
- Genotyping-by-Sequencing Derived Single Nucleotide Polymorphisms Provide the First Well-Resolved Phylogeny for the GenusFrontiers in plant science · 2020Article
- Advances in Molecular Genetics and Genomics of African Rice (Plants (Basel, Switzerland) · 2019Review
- Comparisons of molecular diversity indices, selective sweeps and population structure of African rice with its wild progenitor and Asian rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Article
- Role of genomics in promoting the utilization of plant genetic resources in genebanks.Briefings in functional genomics · 2018Review
- Development of species diagnostic SNP markers for quality control genotyping in four rice (Molecular breeding : new strategies in plant improvement · 2018Article
- Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.Plant biotechnology journal · 2018Article
- Construction of rice chromosome segment substitution lines harboringBreeding science · 2017Article
- Fine mapping of RYMV3: a new resistance gene to Rice yellow mottle virus from Oryza glaberrima.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Genetic Variation and Population Structure ofFrontiers in plant science · 2017Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
key messageWe present here the first curated collection of wild and cultivated African rice species. For that, we designed specific SNPs and were able to structure these very low diverse species. Oryza glaberrima, the cultivated African rice, is endemic from Africa. This species and its direct ancestor, O. barthii, are valuable tool for improvement of Asian rice O. sativa in terms of abiotic and biotic stress resistance. However, only a few limited studies about the genetic diversity of these species were performed. In the present paper, and for the first time at such extend, we genotyped 279 O. glaberrima, selected both for their impact in current breeding and for their geographical distribution, and 101 O. barthii, chosen based on their geographic origin, using a set of 235 SNPs specifically designed for African rice diversity. Using those data, we were able to structure the individuals from our sample in three populations for O. barthii, related to geography, and two populations in O. glaberrima; these two last populations cannot be linked however to any currently phenotyped trait. Moreover, we were also able to identify misclassification in O. glaberrima as well as in O. barthii and identified new form of O. sativa from the set of African varieties.
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