Evidence map›Paper›PMID 25117565›Full record

ArticlePloS one2014

Phosphoproteomic profiling of human myocardial tissues distinguishes ischemic from non-ischemic end stage heart failure.

Matthew A Schechter, Michael K H Hsieh, Linda W Njoroge, J Will Thompson, Erik J Soderblom, Bryan J Feger, Constantine D Troupes, Kathleen A Hershberger, Olga R Ilkayeva, Whitney L Nagel and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Mitochondrial Imaging Detects Early Cardiac Changes Following Cancer Immunotherapy.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  2. Article
  3. Proteomics of the heart.Physiological reviews · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Article
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  12. Article
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  14. Article
  15. Quantitative proteomic and phosphoproteomic profiling of ischemic myocardial stunning in swine.American journal of physiology. Heart and circulatory physiology · 2020
    Article
  16. Article
  17. The nuclear receptor RORα protects against angiotensin II-induced cardiac hypertrophy and heart failure.American journal of physiology. Heart and circulatory physiology · 2019
    Article
  18. Review
  19. Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model.American journal of physiology. Heart and circulatory physiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

Matthew A SchechterDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Michael K H HsiehDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Linda W NjorogeDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
J Will ThompsonDuke Proteomics Core, Duke University Medical Center, Durham, North Carolina, United States of America.
Erik J SoderblomDuke Proteomics Core, Duke University Medical Center, Durham, North Carolina, United States of America.
Bryan J FegerDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Constantine D TroupesDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Kathleen A HershbergerSarah W. Stedman Nutrition and Metabolism Center, Duke University Medical Center, Durham, North Carolina, United States of America; Department of Medicine, Duke University Medical Center, Durham, North Carolina, United States of America.
Olga R IlkayevaSarah W. Stedman Nutrition and Metabolism Center, Duke University Medical Center, Durham, North Carolina, United States of America.
Whitney L NagelDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Gina P LandinezDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Kishan M ShahDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Virginia A BurnsDuke Translational Research Institute, Duke University Medical Center, Durham, North Carolina, United States of America.
Lucia SantacruzDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Matthew D HirscheySarah W. Stedman Nutrition and Metabolism Center, Duke University Medical Center, Durham, North Carolina, United States of America; Department of Medicine, Duke University Medical Center, Durham, North Carolina, United States of America.
Matthew W FosterDivision of Pulmonary, Allergy and Critical Care, Medicine, Duke University Medical Center, Durham, North Carolina, United States of America.
Carmelo A MilanoDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
M Arthur MoseleyDuke Proteomics Core, Duke University Medical Center, Durham, North Carolina, United States of America.
Valentino PiacentinoDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Dawn E BowlesDepartment of Surgery, Duke University Medical Center, Durham, North Carolina, United States of America.
Duke Medical Center · USDuke University Hospital · USDuke University · US

Funding

Pilot Project for the DTMI CRA ProgramUL1RR024128 · NCRR · DUKE UNIVERSITY · PI CALIFF, ROBERT M · 2006 to 2010
$48.1M
Pharmacological Sciences Training ProgramT32GM007105 · NIGMS · DUKE UNIVERSITY · PI KUHN, CYNTHIA M · 1985 to 2019
$9.0M
Studies on the Mechanisms by which SIRT5 Regulates Aging and DiseaseR01AG045351 · NIA · DUKE UNIVERSITY · PI HIRSCHEY, MATTHEW D · 2014 to 2023
$4.4M
Intramural NIH HHSNCRR NIH HHS UL1 RR024128NCRR NIH HHS UL1RR024128NIA NIH HHS R01 AG045351NIGMS NIH HHS T32 GM007105
6 · The paper itself

Abstract

The molecular differences between ischemic (IF) and non-ischemic (NIF) heart failure are poorly defined. A better understanding of the molecular differences between these two heart failure etiologies may lead to the development of more effective heart failure therapeutics. In this study extensive proteomic and phosphoproteomic profiles of myocardial tissue from patients diagnosed with IF or NIF were assembled and compared. Proteins extracted from left ventricular sections were proteolyzed and phosphopeptides were enriched using titanium dioxide resin. Gel- and label-free nanoscale capillary liquid chromatography coupled to high resolution accuracy mass tandem mass spectrometry allowed for the quantification of 4,436 peptides (corresponding to 450 proteins) and 823 phosphopeptides (corresponding to 400 proteins) from the unenriched and phospho-enriched fractions, respectively. Protein abundance did not distinguish NIF from IF. In contrast, 37 peptides (corresponding to 26 proteins) exhibited a ≥ 2-fold alteration in phosphorylation state (p<0.05) when comparing IF and NIF. The degree of protein phosphorylation at these 37 sites was specifically dependent upon the heart failure etiology examined. Proteins exhibiting phosphorylation alterations were grouped into functional categories: transcriptional activation/RNA processing; cytoskeleton structure/function; molecular chaperones; cell adhesion/signaling; apoptosis; and energetic/metabolism. Phosphoproteomic analysis demonstrated profound post-translational differences in proteins that are involved in multiple cellular processes between different heart failure phenotypes. Understanding the roles these phosphorylation alterations play in the development of NIF and IF has the potential to generate etiology-specific heart failure therapeutics, which could be more effective than current therapeutics in addressing the growing concern of heart failure.

Indexed as

ProteomeProteomicsAgedCluster AnalysisComputational BiologyDiagnosis, DifferentialGene Expression ProfilingHeart FailureHeart VentriclesHumansMaleMetabolomeMetabolomicsMiddle AgedMyocardial IschemiaMyocardiumPhosphopeptidesPhosphoproteinsProteome

Identifiers

PMID25117565
PMCPMC4130503
OpenAlexW1994622621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.