Evidence map›Paper›PMID 25116161›Full record

ArticlePloS one2014

The genetic basis of variation in clean lineages of Saccharomyces cerevisiae in response to stresses encountered during bioethanol fermentations.

Darren Greetham, Tithira T Wimalasena, Kay Leung, Marcus E Marvin, Yogeshwar Chandelia, Andrew J Hart, Trevor G Phister, Gregory A Tucker, Edward J Louis, Katherine A Smart

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Darren GreethamSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
Tithira T WimalasenaSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
Kay LeungCentre for Genetic Architecture of Complex Traits, Department of Genetics, University of Leicester, Adrian Building, Leicester, Leicestershire, United Kingdom.
Marcus E MarvinCentre for Genetic Architecture of Complex Traits, Department of Genetics, University of Leicester, Adrian Building, Leicester, Leicestershire, United Kingdom.
Yogeshwar ChandeliaSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
Andrew J HartSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
Trevor G PhisterSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
Gregory A TuckerSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
Edward J LouisCentre for Genetic Architecture of Complex Traits, Department of Genetics, University of Leicester, Adrian Building, Leicester, Leicestershire, United Kingdom.
Katherine A SmartSchool of Biosciences, University of Nottingham, Sutton Bonington campus, Loughborough, United Kingdom.
University of Nottingham · GBUniversity of Leicester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F015216/1Biotechnology and Biological Sciences Research Council BB/G01616X/1
6 · The paper itself

Abstract

Saccharomyces cerevisiae is the micro-organism of choice for the conversion of monomeric sugars into bioethanol. Industrial bioethanol fermentations are intrinsically stressful environments for yeast and the adaptive protective response varies between strain backgrounds. With the aim of identifying quantitative trait loci (QTL's) that regulate phenotypic variation, linkage analysis on six F1 crosses from four highly divergent clean lineages of S. cerevisiae was performed. Segregants from each cross were assessed for tolerance to a range of stresses encountered during industrial bioethanol fermentations. Tolerance levels within populations of F1 segregants to stress conditions differed and displayed transgressive variation. Linkage analysis resulted in the identification of QTL's for tolerance to weak acid and osmotic stress. We tested candidate genes within loci identified by QTL using reciprocal hemizygosity analysis to ascertain their contribution to the observed phenotypic variation; this approach validated a gene (COX20) for weak acid stress and a gene (RCK2) for osmotic stress. Hemizygous transformants with a sensitive phenotype carried a COX20 allele from a weak acid sensitive parent with an alteration in its protein coding compared with other S. cerevisiae strains. RCK2 alleles reveal peptide differences between parental strains and the importance of these changes is currently being ascertained.

Indexed as

FermentationGenetic LinkageGenetic VariationStress, PhysiologicalAdaptation, BiologicalAllelesBase SequenceChromosome MappingChromosomes, FungalCrosses, GeneticEthanolHaploidyHeterozygoteMolecular Sequence DataPhenotypeQuantitative Trait LociEthanolSaccharomyces cerevisiae Proteins

Identifiers

PMID25116161
PMCPMC4130530
OpenAlexW2060109895

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.